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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001007257.3 → NP_001007258.1 PR domain zinc finger protein 2 isoform c
See identical proteins and their annotated locations for NP_001007258.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) is shorter at the 5' end and differs in the 3' UTR and coding region compared to variant 1. Expression of this transcript is under the control of an internal promoter in the gene (PMID: 9006946), which is why it is shorter at the 5' end than variant 1. The resulting isoform (c, also called RIZ2) is shorter at the N-terminus and has a distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AI651991, AL031277, BC014468, BC032768, D45132, U17838
- Consensus CDS
-
CCDS30603.1
- UniProtKB/Swiss-Prot
-
Q13029
- Related
- ENSP00000411103.1, ENST00000413440.5
- Conserved Domains (3) summary
-
- sd00017
Location:935 → 955
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:161 → 181
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:159 → 181
- zf-C2H2; Zinc finger, C2H2 type
-
NM_001135610.2 → NP_001129082.1 PR domain zinc finger protein 2 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) has an alternate 5' UTR and lacks two internal coding exons compared to variant 1. The resulting isoform (d) is much shorter and has a distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AK307377, AL031277, AL359771, BC014468, BU621515
- Consensus CDS
-
CCDS44061.1
- UniProtKB/Swiss-Prot
-
Q13029
- Related
- ENSP00000365216.5, ENST00000376048.9
- Conserved Domains (1) summary
-
- smart00317
Location:28 → 147
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
-
NM_001393986.1 → NP_001380915.1 PR domain zinc finger protein 2 isoform a
Status: REVIEWED
- Source sequence(s)
-
AL031277, AL359771, AL583942
- Consensus CDS
-
CCDS150.1
- UniProtKB/Swiss-Prot
-
Q5VUL9
- Related
- ENSP00000312352.6, ENST00000311066.10
- Conserved Domains (5) summary
-
- sd00017
Location:1136 → 1156
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:362 → 382
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cd19188
Location:23 → 145
- PR-SET_PRDM2; PR-SET domain found in PR domain zinc finger protein 2 (PRDM2) and similar proteins
- pfam00096
Location:360 → 382
- zf-C2H2; Zinc finger, C2H2 type
- pfam13894
Location:483 → 506
- zf-C2H2_4; C2H2-type zinc finger
-
NM_001393987.1 → NP_001380916.1 PR domain zinc finger protein 2 isoform e
Status: REVIEWED
- Source sequence(s)
-
AL031277
- Conserved Domains (4) summary
-
- sd00017
Location:935 → 955
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:161 → 181
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:159 → 181
- zf-C2H2; Zinc finger, C2H2 type
- pfam13894
Location:282 → 305
- zf-C2H2_4; C2H2-type zinc finger
-
NM_001393988.1 → NP_001380917.1 PR domain zinc finger protein 2 isoform c
Status: REVIEWED
- Source sequence(s)
-
AL031277
- Consensus CDS
-
CCDS30603.1
- Related
- ENSP00000341621.4, ENST00000343137.8
- Conserved Domains (3) summary
-
- sd00017
Location:935 → 955
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:161 → 181
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:159 → 181
- zf-C2H2; Zinc finger, C2H2 type
-
NM_012231.5 → NP_036363.2 PR domain zinc finger protein 2 isoform a
See identical proteins and their annotated locations for NP_036363.2
Status: REVIEWED
- Source sequence(s)
-
AL031277, AL359771, AL583942
- Consensus CDS
-
CCDS150.1
- UniProtKB/Swiss-Prot
- Q13029, Q5VUL9
- Related
- ENSP00000235372.6, ENST00000235372.11
- Conserved Domains (5) summary
-
- sd00017
Location:1136 → 1156
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:362 → 382
- ZF_C2H2; C2H2 Zn finger [structural motif]
- cd19188
Location:23 → 145
- PR-SET_PRDM2; PR-SET domain found in PR domain zinc finger protein 2 (PRDM2) and similar proteins
- pfam00096
Location:360 → 382
- zf-C2H2; Zinc finger, C2H2 type
- pfam13894
Location:483 → 506
- zf-C2H2_4; C2H2-type zinc finger
-
NM_015866.6 → NP_056950.2 PR domain zinc finger protein 2 isoform b
See identical proteins and their annotated locations for NP_056950.2
Status: REVIEWED
- Source sequence(s)
-
AL031277, AL359771, AL583942
- UniProtKB/Swiss-Prot
-
Q13029
- Conserved Domains (4) summary
-
- smart00317
Location:28 → 147
- SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
- sd00017
Location:1136 → 1156
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:362 → 382
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:360 → 382
- zf-C2H2; Zinc finger, C2H2 type
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000001.11 Reference GRCh38.p14 Primary Assembly
- Range
-
13700188..13825079
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047429994.1 → XP_047285950.1 PR domain zinc finger protein 2 isoform X1
-
XM_047429995.1 → XP_047285951.1 PR domain zinc finger protein 2 isoform X2
-
XM_047429996.1 → XP_047285952.1 PR domain zinc finger protein 2 isoform X3
-
XM_047429998.1 → XP_047285954.1 PR domain zinc finger protein 2 isoform X5
-
XM_047429997.1 → XP_047285953.1 PR domain zinc finger protein 2 isoform X4
-
XM_017002261.3 → XP_016857750.1 PR domain zinc finger protein 2 isoform X4
- UniProtKB/Swiss-Prot
-
Q13029
- Conserved Domains (4) summary
-
- sd00017
Location:935 → 955
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:161 → 181
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:159 → 181
- zf-C2H2; Zinc finger, C2H2 type
- pfam13894
Location:282 → 305
- zf-C2H2_4; C2H2-type zinc finger
-
XM_017002260.3 → XP_016857749.1 PR domain zinc finger protein 2 isoform X4
- UniProtKB/Swiss-Prot
-
Q13029
- Conserved Domains (4) summary
-
- sd00017
Location:935 → 955
- ZF_C2H2; C2H2 Zn finger [structural motif]
- sd00019
Location:161 → 181
- ZF_C2H2; C2H2 Zn finger [structural motif]
- pfam00096
Location:159 → 181
- zf-C2H2; Zinc finger, C2H2 type
- pfam13894
Location:282 → 305
- zf-C2H2_4; C2H2-type zinc finger
Alternate T2T-CHM13v2.0
Genomic
-
NC_060925.1 Alternate T2T-CHM13v2.0
- Range
-
13142270..13267189
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)