These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in this
section to the one reported in Genomic regions, transcripts, and products above.
Genomic
-
NG_012846.1 RefSeqGene
- Range
- 4650..62575
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001194954.1 → NP_001181883.1 matrin-3 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, compared to variant 1. Variants 1-4 encode the same isoform (a).
- Source sequence(s)
-
AA233906, AB018266, AC011404, AK307872, BX537365, DC333260
- Consensus CDS
-
CCDS4210.1
- UniProtKB/Swiss-Prot
-
P43243
- Conserved Domains (2) summary
-
- cd00590
Location:497 – 568
Blast Score: 121
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- smart00451
Location:798 – 833
Blast Score: 104
- ZnF_U1; U1-like zinc finger
-
NM_001194955.1 → NP_001181884.1 matrin-3 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, compared to variant 1. Variants 1-4 encode the same isoform (a).
- Source sequence(s)
-
AA233906, AB018266, AC011404, AK316420, BX537365
- Consensus CDS
-
CCDS4210.1
- UniProtKB/Swiss-Prot
-
P43243
- Conserved Domains (2) summary
-
- cd00590
Location:497 – 568
Blast Score: 121
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- smart00451
Location:798 – 833
Blast Score: 104
- ZnF_U1; U1-like zinc finger
-
NM_001194956.1 → NP_001181885.1 matrin-3 isoform b
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is shorter than isoform 1.
- Source sequence(s)
-
AA233906, AC011404, AK316420, BX537365
- Consensus CDS
-
CCDS54908.1
- UniProtKB/Swiss-Prot
-
P43243
- Conserved Domains (2) summary
-
- cd00590
Location:209 – 280
Blast Score: 119
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- smart00451
Location:510 – 545
Blast Score: 102
- ZnF_U1; U1-like zinc finger
-
NM_018834.5 → NP_061322.2 matrin-3 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1-4 encode the same isoform (a).
- Source sequence(s)
-
AA233906, AC011404, AY007157, BX537365, DC401586
- Consensus CDS
-
CCDS4210.1
- UniProtKB/Swiss-Prot
-
P43243
- UniProtKB/TrEMBL
-
Q9H4N1
- Related
- ENSP00000378284, OTTHUMP00000159532, ENST00000394805, OTTHUMT00000251324
- Conserved Domains (2) summary
-
- cd00590
Location:497 – 568
Blast Score: 121
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- smart00451
Location:798 – 833
Blast Score: 104
- ZnF_U1; U1-like zinc finger
-
NM_199189.2 → NP_954659.1 matrin-3 isoform a
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a). Variants 1-4 encode the same isoform (a).
- Source sequence(s)
-
AA233906, AB018266, AC011404, AK307872, BX537365, DC333260
- Consensus CDS
-
CCDS4210.1
- UniProtKB/Swiss-Prot
-
P43243
- Related
- ENSP00000378279, OTTHUMP00000159531, ENST00000394800, OTTHUMT00000251323
- Conserved Domains (2) summary
-
- cd00590
Location:497 – 568
Blast Score: 121
- RRM; RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA ...
- smart00451
Location:798 – 833
Blast Score: 104
- ZnF_U1; U1-like zinc finger
RNA
-
NR_036535.1 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) lacks an alternate internal exon, compared to variant 1. This variant is represented as non-coding because it lacks a significant portion of the coding region, including the translational start codon, found in variant 1. Also, this transcript has upstream ORFs that are predicted to interfere with translation of the longest ORF.
- Source sequence(s)
-
AA233906, AB018266, AC011404, AK293952, AK307872, BX537365, DC333260
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as RefSeqs
for chromosomes and scaffolds (contigs) from both reference and alternate assemblies.
Model RNAs and proteins are also reported here.
Reference GRCh37.p10 Primary Assembly
Genomic
-
NC_000005.9 Reference GRCh37.p10 Primary Assembly
- Range
- 138609441..138667366
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate HuRef
Genomic
-
AC_000137.1 Alternate HuRef
- Range
- 133798796..133857165
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate CHM1_1.0
Genomic
-
NC_018916.1 Alternate CHM1_1.0
- Range
- 138885680..138943609
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)