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    Tat [Human immunodeficiency virus 1]

    NCBI Reference Sequence: NP_057853.1

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      • Run BLAST
        Find regions of similarity between this sequence and other sequences using BLAST.
      • Identify Conserved Domains
        View conserved domains detected in this protein sequence using CD-search.
      • Highlight Sequence Features
        Opens the Highlight Feature Bar and highlights feature annotations from the FEATURES table of the record. The Highlight Feature Bar can be used to navigate to and highlight other features and provides links to display the highlighted region separately. Links in the FEATURES table will also highlight the corresponding region of the sequence. More...
      • Find in this Sequence
        Finds sub-sequences or patterns in the sequence and highlights the matching regions. The tool works with standard single letter nucleotide or protein codes including ambiguities and can match Prosite patterns in protein sequences. More...

      Protein 3D Structure

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      Retrovirus Resource

      Articles about the tat gene

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      Identical proteins for NP_057853.1

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      Pathways for the tat gene

      • Interactions of Tat with host cellular proteins
        Interactions of Tat with host cellular proteinsThe elongation of HIV-1 mRNA depends upon the interaction of Tat with the host P-TEFb complex (Hermann and Rice, 1995; Wei et al., 1998). ... [bsid106018]
      • Formation of HIV-1 elongation complex containing HIV-1 Tat
        Formation of HIV-1 elongation complex containing HIV-1 TatThis HIV-1 event was inferred from the corresponding human RNA Poll II transcription event in Reactome. The details relevant to HIV-1 are described below. For a more detailed description of the genera ... [bsid106004]
      • Pausing and recovery of Tat-mediated HIV-1 elongation
        Pausing and recovery of Tat-mediated HIV-1 elongationAfter Pol II pauses by back tracking 2 -4 nuleotides on the HIV-1 template, elongation of the HIV-1 transcript resumes. ... [bsid161055]
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      More about the gene tat

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      Related information

      • BLink
        BLAST Link. Pre-computed sequence similarity results (BLAST) including alignments for the current protein against the NCBI nr protein database. Organism specific, RefSeq and other database subsets are available as well as access to a pre-computed multiple alignment.
      • Related Sequences
        Protein sequences related by sequence similarity (BLAST) score to the current records.
      • Identical Proteins
        Proteins with identical sequences to the records in the current set.
      • BioProject
        Proteins related to BioProjects
      • BioSystems
        Pathways and other biosystems containing the current proteins.
      • CDD Search Results
        Graphical display of conserved domains identified in the protein using RPS-BLAST. The concise results (top-scoring hits) are shown by default, with an option to view the full results, if desired. Click on any domain footprint in the graphical display to see more details and to view the query protein sequence embedded in the domain model’s multiple sequence alignment.
      • Conserved Domains (Concise)
        Concise (top-scoring) list of conserved domains present in the current proteins as determined by a Conserved Domain Database search using RPS-BLAST. For each region on a protein query sequence, this set includes: (a) a specific hit, if one is available, (b) the conserved domain superfamily, and (c) the best-scoring hit that is classified as a multi-domain model, if the alignment is near-complete with respect to that multidomain model footprint.
      • Conserved Domains (Full)
        Full list of Conserved domains present in the current proteins as determined by a Conserved Domain Database search using RPS-BLAST. This set includes all domain models that meet or exceed the RPS-BLAST threshold for statistical significance, as well as the conserved domain superfamilies to which they belong.
      • Domain Relatives
        Conserved Domain Architecture Retrieval Tool (cDART) results for proteins in the current set. cDART identifies proteins that have similar kinds of conserved domains with similar organization.
      • Encoding mRNA
        Link from protein to encoding mRNA
      • Full text in PMC
        Free full-text articles in PubMed central that cite protein records in the current set.
      • Gene
        Gene records referencing the current protein sequence records. Sequences included in Gene records are added manually by NCBI.
      • Genome
        Genome records that have the current protein records as annotated features.
      • Nucleotide
        Nucleotide records that are the source of protein records in the current set. The protein sequences are generated through translation of coding region features on the nucleotide records.
      • Protein (UniProtKB)
        Corresponding UniProt records for Reference Sequence (RefSeq) protein records in the current set.
      • PubMed
        PubMed articles that cite the protein records in the current set. These are articles that report the International Nucleotide Database Collaboration (DDBJ, EMBL, GenBank) records. These articles are also linked to Reference Sequences derived from the GenBank records.
      • PubMed (RefSeq)
        Link to RefSeq PubMed articles
      • PubMed (Weighted)
        PubMed articles associated with the current protein record through related Gene database records. These articles include Reference into Function, citations in related OMIM, and those associated with sequences in the Gene record.
      • Related Structures (List)
        List of three dimensional structure records that contain one or more protein molecules similar in sequence to the current protein(s). Each 3D structure and its corresponding sequence data can be viewed interactively in the free Cn3D tool.
      • Related Structures (Summary)
        Graphical summary of three dimensional structures that contain one or more protein molecules similar in sequence to your query protein. Alignment footprints indicate regions of similarity between the query protein and the structure-based protein, with an option to view the 3D structure and corresponding sequence alignment interactively in the free Cn3D tool.
      • Structure
        Three dimensional structure records that are the sources of the protein records in the current set. Each 3D structure and its corresponding sequence data can be viewed interactively in the free Cn3D tool.
      • Taxonomy
        NCBI Taxonomy entries and classification information for the source organisms of the current set of records.

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