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GTDC1 glycosyltransferase like domain containing 1 [ Homo sapiens (human) ]

Gene ID: 79712, updated on 23-Nov-2021

Summary

Official Symbol
GTDC1provided by HGNC
Official Full Name
glycosyltransferase like domain containing 1provided by HGNC
Primary source
HGNC:HGNC:20887
See related
Ensembl:ENSG00000121964 MIM:610165
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
mat-Xa; Hmat-Xa
Expression
Ubiquitous expression in brain (RPKM 3.1), fat (RPKM 2.4) and 25 other tissues See more
Orthologs
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Genomic context

See GTDC1 in Genome Data Viewer
Location:
2q22.3
Exon count:
37
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (143938068..144333069, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (144695635..145090636, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene Rho GTPase activating protein 15 Neighboring gene uncharacterized LOC101928361 Neighboring gene ARHGAP15 antisense RNA 1 Neighboring gene uncharacterized LOC101928386 Neighboring gene Sharpr-MPRA regulatory region 4867 Neighboring gene skeletal muscle cis-regulatory module overlapping ZEB2 Neighboring gene Sharpr-MPRA regulatory region 3137 Neighboring gene zinc finger E-box binding homeobox 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ44822

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
glycosyltransferase-like domain-containing protein 1
Names
glycosyltransferase-like 1
mannosyltransferase candidate
mannosyltransferase-like protein Xa

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001006636.5NP_001006637.1  glycosyltransferase-like domain-containing protein 1 isoform a

    See identical proteins and their annotated locations for NP_001006637.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1), as well as variants 3, 12, 18, and 21-29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010681, AC016910
    Consensus CDS
    CCDS33300.1
    UniProtKB/Swiss-Prot
    Q4AE62
    Related
    ENSP00000386581.1, ENST00000409214.5
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  2. NM_001164629.5NP_001158101.1  glycosyltransferase-like domain-containing protein 1 isoform a

    See identical proteins and their annotated locations for NP_001158101.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 3, 12, 18, and 21-29 all encode the same isoform (a).
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Consensus CDS
    CCDS33300.1
    UniProtKB/Swiss-Prot
    Q4AE62
    Related
    ENSP00000438323.1, ENST00000542155.5
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  3. NM_001284233.4NP_001271162.1  glycosyltransferase-like domain-containing protein 1 isoform c

    See identical proteins and their annotated locations for NP_001271162.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has a shorter 5' UTR, and lacks an alternate exon that results in a frameshift in the 3' coding region, compared to variant 1. The encoded isoform (c) has a distinct and shorter C-terminus, compared to isoform a. Variants 4, 17, 32, and 33 all encode the same isoform (c).
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Consensus CDS
    CCDS63029.1
    UniProtKB/Swiss-Prot
    Q4AE62
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  4. NM_001284234.3NP_001271163.1  glycosyltransferase-like domain-containing protein 1 isoform d

    See identical proteins and their annotated locations for NP_001271163.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR, lacks a portion of the 5' coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (d) is shorter at the N-terminus, compared to isoform a. Variants 5 and 9 both encode the same isoform (d).
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Consensus CDS
    CCDS74582.1
    UniProtKB/Swiss-Prot
    Q4AE62
    Related
    ENSP00000437964.1, ENST00000463875.6
    Conserved Domains (2) summary
    COG0438
    Location:147321
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:135
    DUF3524; Domain of unknown function (DUF3524)
  5. NM_001284235.2NP_001271164.1  glycosyltransferase-like domain-containing protein 1 isoform e

    See identical proteins and their annotated locations for NP_001271164.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) differs in the 5' and 3' UTRs, and lacks several exons in the 3' coding region but has an alternate 3' terminal exon, compared to variant 1. The encoded isoform (e) is shorter at the C-terminus, compared to isoform a. Variants 6, 14, 16, and 44 all encode the same isoform (e).
    Source sequence(s)
    AC009957, AC010130, AC010681
    UniProtKB/Swiss-Prot
    Q4AE62
    Related
    ENST00000491448.5
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  6. NM_001284238.3NP_001271167.1  glycosyltransferase-like domain-containing protein 1 isoform f precursor

    See identical proteins and their annotated locations for NP_001271167.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7) differs in the 5' UTR, and initiates translation at an alternate start codon, compared to variant 1. The encoded isoform (f) has a distinct and shorter N-terminus, compared to isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Consensus CDS
    CCDS74583.1
    UniProtKB/Swiss-Prot
    Q4AE62
    Conserved Domains (2) summary
    COG0438
    Location:244418
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:24132
    DUF3524; Domain of unknown function (DUF3524)
  7. NM_001354350.2NP_001341279.1  glycosyltransferase-like domain-containing protein 1 isoform g

    Status: VALIDATED

    Description
    Transcript Variant: This variant (8), as well as variants 13 and 43, encodes isoform g.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    cd01635
    Location:135247
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
  8. NM_001354351.2NP_001341280.1  glycosyltransferase-like domain-containing protein 1 isoform d

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Consensus CDS
    CCDS74582.1
    Conserved Domains (2) summary
    COG0438
    Location:147321
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:135
    DUF3524; Domain of unknown function (DUF3524)
  9. NM_001354352.2NP_001341281.1  glycosyltransferase-like domain-containing protein 1 isoform h

    Status: VALIDATED

    Description
    Transcript Variant: This variant (10), as well as variants 19 and 39-42, encodes isoform h.
    Source sequence(s)
    AC009957, AC010130, AC016910
    Consensus CDS
    CCDS86884.1
    Conserved Domains (2) summary
    cd01635
    Location:173281
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  10. NM_001354353.2NP_001341282.1  glycosyltransferase-like domain-containing protein 1 isoform i

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  11. NM_001354354.2NP_001341283.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Consensus CDS
    CCDS33300.1
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  12. NM_001354355.3NP_001341284.1  glycosyltransferase-like domain-containing protein 1 isoform g

    Status: VALIDATED

    Description
    Transcript Variant: This variant (13), as well as variants 8 and 43, encodes isoform g.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    cd01635
    Location:135247
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
  13. NM_001354356.2NP_001341285.1  glycosyltransferase-like domain-containing protein 1 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  14. NM_001354358.1NP_001341287.1  glycosyltransferase-like domain-containing protein 1 isoform e

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010681
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  15. NM_001354360.2NP_001341289.1  glycosyltransferase-like domain-containing protein 1 isoform c

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Consensus CDS
    CCDS63029.1
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  16. NM_001354361.1NP_001341290.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010681, AC016910
    Consensus CDS
    CCDS33300.1
    Related
    ENSP00000339750.4, ENST00000344850.8
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  17. NM_001354362.3NP_001341291.1  glycosyltransferase-like domain-containing protein 1 isoform h

    Status: VALIDATED

    Description
    Transcript Variant: This variant (19), as well as variants 10 and 39-42, encodes isoform h.
    Source sequence(s)
    AC009957, AC010130, AC016910
    Consensus CDS
    CCDS86884.1
    Conserved Domains (2) summary
    cd01635
    Location:173281
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  18. NM_001376306.2NP_001363235.1  glycosyltransferase-like domain-containing protein 1 isoform j

    Status: VALIDATED

    Description
    Transcript Variant: This variant (20) encodes the longest isoform (j).
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  19. NM_001376307.2NP_001363236.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (21), as well as variants 1, 3, 12, 18, and 22-29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  20. NM_001376308.2NP_001363237.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (22), as well as variants 1, 3, 12, 18, 21, and 23-29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  21. NM_001376309.2NP_001363238.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (23), as well as variants 1, 3, 12, 18, 21, 22, and 24-29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  22. NM_001376310.2NP_001363239.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (24), as well as variants 1, 3, 12, 18, 21-23, and 25-29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  23. NM_001376311.2NP_001363240.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (25), as well as variants 1, 3, 12, 18, 21-24, and 26-29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  24. NM_001376312.2NP_001363241.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (26), as well as variants 1, 3, 12, 18, 21-25, and 27-29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Related
    ENSP00000507713.1, ENST00000682281.1
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  25. NM_001376313.2NP_001363242.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (27), as well as variants 1, 3, 12, 18, 21-26, 28, and 29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  26. NM_001376314.2NP_001363243.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (28), as well as variants 1, 3, 12, 18, 21-27, and 29, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  27. NM_001376315.2NP_001363244.1  glycosyltransferase-like domain-containing protein 1 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (29), as well as variants 1, 3, 12, 18, and 21-28, encodes isoform a.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  28. NM_001376316.2NP_001363245.1  glycosyltransferase-like domain-containing protein 1 isoform k

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:290398
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  29. NM_001376317.2NP_001363246.1  glycosyltransferase-like domain-containing protein 1 isoform l

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  30. NM_001376318.2NP_001363247.1  glycosyltransferase-like domain-containing protein 1 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (32), as well as variants 4, 17, and 33, encodes isoform c.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  31. NM_001376319.2NP_001363248.1  glycosyltransferase-like domain-containing protein 1 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (33), as well as variants 4, 17, and 32, encodes isoform c.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  32. NM_001376320.2NP_001363249.1  glycosyltransferase-like domain-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (34), as well as variants 2 and 35-38, encodes isoform b.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  33. NM_001376321.2NP_001363250.1  glycosyltransferase-like domain-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (35), as well as variants 2, 34, and 36-38, encodes isoform b.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  34. NM_001376322.2NP_001363251.1  glycosyltransferase-like domain-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (36), as well as variants 2, 34, 35, 37, and 38, encodes isoform b.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  35. NM_001376323.2NP_001363252.1  glycosyltransferase-like domain-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (37), as well as variants 2, 34, 35, 36, and 38, encodes isoform b.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  36. NM_001376324.2NP_001363253.1  glycosyltransferase-like domain-containing protein 1 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (38), as well as variants 2 and 34-37, encodes isoform b.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  37. NM_001376325.2NP_001363254.1  glycosyltransferase-like domain-containing protein 1 isoform h

    Status: VALIDATED

    Description
    Transcript Variant: This variant (39), as well as variants 10, 19, and 40-42, encodes isoform h.
    Source sequence(s)
    AC009957, AC010130, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:173281
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  38. NM_001376326.2NP_001363255.1  glycosyltransferase-like domain-containing protein 1 isoform h

    Status: VALIDATED

    Description
    Transcript Variant: This variant (40), as well as variants 10, 19, 39, 41, and 42, encodes isoform h.
    Source sequence(s)
    AC009957, AC010130, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:173281
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  39. NM_001376327.2NP_001363256.1  glycosyltransferase-like domain-containing protein 1 isoform h

    Status: VALIDATED

    Description
    Transcript Variant: This variant (41), as well as variants 10, 19, 39, 40, and 42, encodes isoform h.
    Source sequence(s)
    AC009957, AC010130, AC016910
    Conserved Domains (2) summary
    cd01635
    Location:173281
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  40. NM_001376328.1NP_001363257.1  glycosyltransferase-like domain-containing protein 1 isoform h

    Status: VALIDATED

    Description
    Transcript Variant: This variant (42), as well as variants 10, 19, and 39-41, encodes isoform h.
    Source sequence(s)
    AC009957, AC016910
    Related
    ENSP00000386691.1, ENST00000409298.5
    Conserved Domains (2) summary
    cd01635
    Location:173281
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  41. NM_001376329.2NP_001363258.1  glycosyltransferase-like domain-containing protein 1 isoform g

    Status: VALIDATED

    Description
    Transcript Variant: This variant (43), as well as variants 8 and 13, encodes isoform g.
    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
    Conserved Domains (1) summary
    cd01635
    Location:135247
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
  42. NM_001376330.1NP_001363259.1  glycosyltransferase-like domain-containing protein 1 isoform e

    Status: VALIDATED

    Description
    Transcript Variant: This variant (44), as well as variants 6, 14, and 16, encodes isoform e.
    Source sequence(s)
    AC009957, AC010130, AC010681
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  43. NM_001376331.2NP_001363260.1  glycosyltransferase-like domain-containing protein 1 isoform m

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  44. NM_001376332.2NP_001363261.1  glycosyltransferase-like domain-containing protein 1 isoform n

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC016910
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  45. NM_024659.6NP_078935.2  glycosyltransferase-like domain-containing protein 1 isoform b

    See identical proteins and their annotated locations for NP_078935.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, and lacks two alternate exons that result in the loss of an in-frame segment in the 3' coding region, compared to variant 1. The encoded isoform (b) is shorter than isoform a. Variants 2 and 34-38 all encode the same isoform (b).
    Source sequence(s)
    AC009957, AC010681, AC016910
    Consensus CDS
    CCDS2185.1
    UniProtKB/Swiss-Prot
    Q4AE62
    Related
    ENSP00000376606.3, ENST00000392867.7
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)

RNA

  1. NR_148872.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010681, AC016910
  2. NR_164799.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
  3. NR_164800.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
  4. NR_164801.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
  5. NR_164802.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
  6. NR_164803.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
  7. NR_164804.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
  8. NR_164805.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
  9. NR_164806.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910
  10. NR_164807.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC016910
  11. NR_164808.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC016910
  12. NR_164809.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC009957, AC010130, AC010681, AC016910

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    143938068..144333069 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024453144.1XP_024308912.1  glycosyltransferase-like domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    cd01635
    Location:304416
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:24132
    DUF3524; Domain of unknown function (DUF3524)
  2. XM_024453143.1XP_024308911.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  3. XM_017004918.2XP_016860407.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  4. XM_017004935.2XP_016860424.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    UniProtKB/Swiss-Prot
    Q4AE62
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  5. XM_017004934.2XP_016860423.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    UniProtKB/Swiss-Prot
    Q4AE62
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  6. XM_024453146.1XP_024308914.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  7. XM_024453142.1XP_024308910.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  8. XM_017004920.2XP_016860409.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  9. XM_017004939.2XP_016860428.1  glycosyltransferase-like domain-containing protein 1 isoform X8

    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  10. XM_017004923.2XP_016860412.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  11. XM_017004922.2XP_016860411.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  12. XM_011511843.3XP_011510145.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_011510145.1

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  13. XM_024453148.1XP_024308916.1  glycosyltransferase-like domain-containing protein 1 isoform X9

    Conserved Domains (2) summary
    COG0438
    Location:244418
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:24132
    DUF3524; Domain of unknown function (DUF3524)
  14. XM_017004957.2XP_016860446.1  glycosyltransferase-like domain-containing protein 1 isoform X17

    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  15. XM_017004936.2XP_016860425.1  glycosyltransferase-like domain-containing protein 1 isoform X5

    UniProtKB/Swiss-Prot
    Q4AE62
    Conserved Domains (2) summary
    cd01635
    Location:287399
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  16. XM_017004921.2XP_016860410.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  17. XM_005263784.3XP_005263841.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_005263841.1

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  18. XM_011511855.3XP_011510157.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    See identical proteins and their annotated locations for XP_011510157.1

    Conserved Domains (2) summary
    cd01635
    Location:336448
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  19. XM_024453141.1XP_024308909.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    Conserved Domains (2) summary
    COG0438
    Location:334508
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:11173
    DUF3524; Domain of unknown function (DUF3524)
  20. XM_017004937.2XP_016860426.1  glycosyltransferase-like domain-containing protein 1 isoform X6

  21. XM_017004956.2XP_016860445.1  glycosyltransferase-like domain-containing protein 1 isoform X16

  22. XM_017004940.2XP_016860429.1  glycosyltransferase-like domain-containing protein 1 isoform X10

  23. XM_017004926.2XP_016860415.1  glycosyltransferase-like domain-containing protein 1 isoform X4

  24. XM_024453145.1XP_024308913.1  glycosyltransferase-like domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    cd01635
    Location:304416
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:24132
    DUF3524; Domain of unknown function (DUF3524)
  25. XM_011511856.3XP_011510158.1  glycosyltransferase-like domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    cd01635
    Location:304416
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:24132
    DUF3524; Domain of unknown function (DUF3524)
  26. XM_017004925.2XP_016860414.1  glycosyltransferase-like domain-containing protein 1 isoform X3

    Conserved Domains (2) summary
    cd01635
    Location:304416
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:24132
    DUF3524; Domain of unknown function (DUF3524)
  27. XM_017004948.1XP_016860437.1  glycosyltransferase-like domain-containing protein 1 isoform X13

    UniProtKB/Swiss-Prot
    Q4AE62
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  28. XM_024453147.1XP_024308915.1  glycosyltransferase-like domain-containing protein 1 isoform X9

    Related
    ENSP00000484990.1, ENST00000618778.4
    Conserved Domains (2) summary
    COG0438
    Location:244418
    RfaB; Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis]
    pfam12038
    Location:24132
    DUF3524; Domain of unknown function (DUF3524)
  29. XM_017004942.1XP_016860431.1  glycosyltransferase-like domain-containing protein 1 isoform X12

    UniProtKB/Swiss-Prot
    Q4AE62
    Related
    ENSP00000241391.6, ENST00000241391.9
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  30. XM_017004944.1XP_016860433.1  glycosyltransferase-like domain-containing protein 1 isoform X13

    UniProtKB/Swiss-Prot
    Q4AE62
    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  31. XM_017004938.1XP_016860427.1  glycosyltransferase-like domain-containing protein 1 isoform X7

  32. XM_017004941.1XP_016860430.1  glycosyltransferase-like domain-containing protein 1 isoform X11

  33. XM_024453149.1XP_024308917.1  glycosyltransferase-like domain-containing protein 1 isoform X15

    Conserved Domains (2) summary
    cd01635
    Location:173281
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  34. XM_017004949.2XP_016860438.1  glycosyltransferase-like domain-containing protein 1 isoform X14

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