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Gtdc1 glycosyltransferase-like domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 227835, updated on 26-Sep-2022

Summary

Official Symbol
Gtdc1provided by MGI
Official Full Name
glycosyltransferase-like domain containing 1provided by MGI
Primary source
MGI:MGI:2444269
See related
Ensembl:ENSMUSG00000036890 AllianceGenome:MGI:2444269
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
E330008O22Rik
Summary
Predicted to enable glycosyltransferase activity. Is expressed in brain; spinal cord; and telencephalon marginal layer. Orthologous to human GTDC1 (glycosyltransferase like domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in cortex adult (RPKM 8.8), CNS E18 (RPKM 7.0) and 23 other tissues See more
Orthologs
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Genomic context

See Gtdc1 in Genome Data Viewer
Location:
2; 2 B
Exon count:
18
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (44454420..44817761, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (44564412..44927717, complement)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene predicted gene, 39805 Neighboring gene predicted gene, 39806 Neighboring gene predicted gene, 52509 Neighboring gene predicted gene, 39807 Neighboring gene centromere protein C1 pseudogene Neighboring gene zinc finger E-box binding homeobox 2 Neighboring gene microRNA 5129 Neighboring gene zinc finger E-box binding homeobox 2, opposite strand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (3) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
glycosyltransferase-like domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362986.1NP_001349915.1  glycosyltransferase-like domain-containing protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-3 all encode the same protein.
    Source sequence(s)
    AL844891, AL929120, AL935057, BX293544
    Consensus CDS
    CCDS71050.1
    UniProtKB/Swiss-Prot
    Q8C1B8
    Conserved Domains (2) summary
    cd01635
    Location:275386
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  2. NM_001362987.1NP_001349916.1  glycosyltransferase-like domain-containing protein 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-3 all encode the same protein.
    Source sequence(s)
    AL844891, AL929120, AL935057, BX293544
    Consensus CDS
    CCDS71050.1
    UniProtKB/Swiss-Prot
    Q8C1B8
    Related
    ENSMUSP00000038119.7, ENSMUST00000049051.13
    Conserved Domains (2) summary
    cd01635
    Location:275386
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  3. NM_172662.3NP_766250.2  glycosyltransferase-like domain-containing protein 1

    See identical proteins and their annotated locations for NP_766250.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents a protein-coding transcript, as do variants 2 and 3. Variants 1-3 all encode the same protein.
    Source sequence(s)
    AK054272, BC052069
    Consensus CDS
    CCDS71050.1
    UniProtKB/Swiss-Prot
    Q8BW56, Q8C1B8
    Related
    ENSMUSP00000108429.2, ENSMUST00000112810.8
    Conserved Domains (2) summary
    cd01635
    Location:275386
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)

RNA

  1. NR_156429.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK038057, AL929120, AL935057
  2. NR_156430.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK163943, AL935057
    Related
    ENSMUST00000100127.9

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    44454420..44817761 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011239091.3XP_011237393.1  glycosyltransferase-like domain-containing protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011237393.1

    UniProtKB/Swiss-Prot
    Q8BW56, Q8C1B8
    Conserved Domains (2) summary
    cd01635
    Location:275386
    Glycosyltransferase_GTB-type; glycosyltransferase family 1 and related proteins with GTB topology
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)
  2. XM_030250118.2XP_030105978.1  glycosyltransferase-like domain-containing protein 1 isoform X2

    Conserved Domains (1) summary
    pfam12038
    Location:2164
    DUF3524; Domain of unknown function (DUF3524)

RNA

  1. XR_003952199.2 RNA Sequence

  2. XR_003952196.2 RNA Sequence