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klf11 KLF transcription factor 11 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733909, updated on 17-Aug-2024

Summary

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Official Symbol
klf11provided by Xenbase
Official Full Name
KLF transcription factor 11provided by Xenbase
Primary source
Xenbase:XB-GENE-956858
See related
Ensembl:ENSXETG00000007013
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Also known as
fklf; fklf1; mody7; tieg2; tieg3
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (138140171..138150693)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (134097740..134107830)

Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene TATA-box binding protein associated factor, RNA polymerase I, B Neighboring gene grainyhead like transcription factor 1 Neighboring gene uncharacterized protein MGC147302 Neighboring gene ribonucleotide reductase M2, gene 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides. Rana AA, et al. PLoS Genet, 2006 Nov 17. PMID 17112317, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC135223, MGC145216

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within gastrulation with mouth forming second IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
Krueppel-like factor 11
Names
Kruppel-like factor 11
novel kruppel-like factor family protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001079569.1 → NP_001073037.1  Krueppel-like factor 11

    See identical proteins and their annotated locations for NP_001073037.1

    Status: PROVISIONAL

    Source sequence(s)
    BC121242
    UniProtKB/TrEMBL
    F7BL80, Q0VA55
    Related
    ENSXETP00000015295.4, ENSXETT00000015295.5
    Conserved Domains (5) summary
    COG5048
    Location:359 → 430
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:377 → 399
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:435 → 457
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:421 → 444
    zf-H2C2_2; Zinc-finger double domain
    cl26464
    Location:94 → 365
    Atrophin-1; Atrophin-1 family

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    138140171..138150693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012963098.3 → XP_012818552.1  Krueppel-like factor 11 isoform X1

    UniProtKB/TrEMBL
    A0A6I8Q1S2, F7BL80
    Related
    ENSXETP00000061459.3, ENSXETT00000060309.3
    Conserved Domains (5) summary
    PHA03247
    Location:95 → 366
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:360 → 431
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:381 → 400
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:436 → 458
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:422 → 445
    zf-H2C2_2; Zinc-finger double domain

  2. XM_012963099.3 → XP_012818553.1  Krueppel-like factor 11 isoform X2

    UniProtKB/TrEMBL
    A0A8J0SED3, F7BL80
    Conserved Domains (5) summary
    PHA03247
    Location:87 → 358
    PHA03247; large tegument protein UL36; Provisional
    COG5048
    Location:352 → 423
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:373 → 392
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:428 → 450
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:414 → 437
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein Strain
Heading Accession and Version

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