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GLIS1 GLIS family zinc finger 1 [ Canis lupus familiaris (dog) ]

Gene ID: 489582, updated on 17-Aug-2024

Summary

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Official Symbol
GLIS1provided by VGNC
Official Full Name
GLIS family zinc finger 1provided by VGNC
Primary source
VGNC:VGNC:49872
See related
Ensembl:ENSCAFG00845015915
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 5 NC_051809.1 (55421148..55643989)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 5 NC_006587.4 (55299439..55521815)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 5 NC_049226.1 (55694978..55917623)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 5 NC_049265.1 (55415266..55637774)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 5 NC_049746.1 (55305457..55528002)

Chromosome 5 - NC_051809.1Genomic Context describing neighboring genes Neighboring gene Yip1 domain family member 1 Neighboring gene NDC1 transmembrane nucleoporin Neighboring gene uncharacterized LOC119871885 Neighboring gene proline-rich protein 3-like Neighboring gene uncharacterized LOC111095955 Neighboring gene uncharacterized LOC119876303 Neighboring gene DMRT like family B with proline rich C-terminal 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein GLIS1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051809.1 Reference ROS_Cfam_1.0

    Range
    55421148..55643989
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038666200.1 → XP_038522128.1  zinc finger protein GLIS1

    UniProtKB/TrEMBL
    A0A8C0KDE8, A0A8P0SN13
    Related
    ENSCAFP00845022274.1, ENSCAFT00845028313.1
    Conserved Domains (2) summary
    COG5048
    Location:438 → 517
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:442 → 464
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049265.1 Alternate UMICH_Zoey_3.1

    Range
    55415266..55637774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038476318.1 → XP_038332246.1  zinc finger protein GLIS1

    Conserved Domains (2) summary
    COG5048
    Location:438 → 517
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:442 → 464
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049746.1 Alternate UNSW_CanFamBas_1.0

    Range
    55305457..55528002
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038601632.1 → XP_038457560.1  zinc finger protein GLIS1

    Conserved Domains (2) summary
    COG5048
    Location:438 → 517
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:442 → 464
    ZF_C2H2; C2H2 Zn finger [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049226.1 Alternate UU_Cfam_GSD_1.0

    Range
    55694978..55917623
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038537490.1 → XP_038393418.1  zinc finger protein GLIS1

    UniProtKB/TrEMBL
    A0A8P0SN13

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006587.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    55299439..55521815
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022418857.2 → XP_022274565.1  zinc finger protein GLIS1

    UniProtKB/TrEMBL
    A0A8P0SN13
    Conserved Domains (2) summary
    COG5048
    Location:440 → 519
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:444 → 466
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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