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UU_Cfam_GSD_1.0

Organism name:
Canis lupus familiaris (dog)
Infraspecific name:
Breed: German Shepherd
Isolate:
Mischka
Sex:
female
BioSample:
SAMN13230619
BioProject:
PRJNA587469
Submitter:
Uppsala University
Date:
2020/03/10
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_011100685.1 (latest)
RefSeq assembly accession:
GCF_011100685.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for GenBank version
WGS Project:
JAAHUQ01
Assembly method:
FALCON v. 0.5.0
Expected final version:
yes
Genome coverage:
100.0x

IDs: 6119491 [UID] 17410168 [GenBank] 20192338 [RefSeq]

See Genome Information for Canis lupus

There are 167 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,482,000,080
Total ungapped length2,481,941,580
Gaps between scaffolds0
Number of scaffolds2,198
Scaffold N5064,299,765
Scaffold L5015
Number of contigs2,783
Contig N5014,840,767
Contig L5057
Total number of chromosomes and plasmids40
Number of component sequences (WGS or clone)2,783

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_011100695.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM021962.1=NC_049222.10
Chromosome 2CM021963.1=NC_049223.10
Chromosome 3CM021964.1=NC_049224.10
Chromosome 4CM021965.1=NC_049225.10
Chromosome 5CM021966.1=NC_049226.10
Chromosome 6CM021967.1=NC_049227.10
Chromosome 7CM021968.1=NC_049228.10
Chromosome 8CM021969.1=NC_049229.10
Chromosome 9CM021970.1=NC_049230.10
Chromosome 10CM021971.1=NC_049231.10
Chromosome 11CM021972.1=NC_049232.10
Chromosome 12CM021973.1=NC_049233.10
Chromosome 13CM021974.1=NC_049234.10
Chromosome 14CM021975.1=NC_049235.10
Chromosome 15CM021976.1=NC_049236.10
Chromosome 16CM021977.1=NC_049237.10
Chromosome 17CM021978.1=NC_049238.10
Chromosome 18CM021979.1=NC_049239.10
Chromosome 19CM021980.1=NC_049240.10
Chromosome 20CM021981.1=NC_049241.10
Chromosome 21CM021982.1=NC_049242.10
Chromosome 22CM021983.1=NC_049243.10
Chromosome 23CM021984.1=NC_049244.10
Chromosome 24CM021985.1=NC_049245.10
Chromosome 25CM021986.1=NC_049246.10
Chromosome 26CM021987.1=NC_049247.10
Chromosome 27CM021988.1=NC_049248.10
Chromosome 28CM021989.1=NC_049249.10
Chromosome 29CM021990.1=NC_049250.10
Chromosome 30CM021991.1=NC_049251.10
Chromosome 31CM021992.1=NC_049252.10
Chromosome 32CM021993.1=NC_049253.10
Chromosome 33CM021994.1=NC_049254.10
Chromosome 34CM021995.1=NC_049255.10
Chromosome 35CM021996.1=NC_049256.10
Chromosome 36CM021997.1=NC_049257.10
Chromosome 37CM021998.1=NC_049258.10
Chromosome 38CM021999.1=NC_049259.10
Chromosome XCM022000.1=NC_049260.10
unplacedn/an/an/a2,158

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,481,983,3522,1972,481,924,85264,299,7655850
Chromosome 1123,556,4691123,555,469123,556,469100
Chromosome 284,979,418184,977,11884,979,418230
Chromosome 392,479,059192,478,15992,479,05990
Chromosome 489,535,178189,533,97889,535,178120
Chromosome 589,562,946189,562,24689,562,94670
Chromosome 678,113,029178,111,82978,113,029120
Chromosome 781,081,596181,081,19681,081,59640
Chromosome 876,405,709176,405,30976,405,70940
Chromosome 961,171,909161,171,40961,171,90950
Chromosome 1070,643,054170,642,55470,643,05450
Chromosome 1174,805,798174,803,99874,805,798180
Chromosome 1272,970,719172,969,91972,970,71980
Chromosome 1364,299,765164,297,96564,299,765180
Chromosome 1461,112,200161,111,20061,112,200100
Chromosome 1564,676,183164,675,28364,676,18390
Chromosome 1660,362,399160,359,99960,362,399240
Chromosome 1765,088,165165,086,66565,088,165150
Chromosome 1856,472,973156,472,57356,472,97340
Chromosome 1955,516,201155,514,80155,516,201140
Chromosome 2058,627,490158,626,99058,627,49050
Chromosome 2151,742,555151,741,25551,742,555130
Chromosome 2261,573,679161,573,37961,573,67930
Chromosome 2353,134,997153,134,59753,134,99740
Chromosome 2448,566,227148,565,22748,566,227100
Chromosome 2551,730,745151,730,34551,730,74540
Chromosome 2639,257,614139,256,41439,257,614120
Chromosome 2746,662,488146,661,78846,662,48870
Chromosome 2841,733,330141,732,93041,733,33040
Chromosome 2942,517,134142,516,73442,517,13440
Chromosome 3040,643,782140,643,38240,643,78240
Chromosome 3139,901,454139,900,75439,901,45470
Chromosome 3240,225,481140,224,58140,225,48190
Chromosome 3332,139,216132,138,51632,139,21670
Chromosome 3442,397,973142,397,67342,397,97330
Chromosome 3528,051,305128,050,40528,051,30590
Chromosome 3631,223,415131,223,11531,223,41530
Chromosome 3730,785,915130,785,71530,785,91520
Chromosome 3824,803,098124,802,59824,803,09850
Chromosome X124,992,0301124,987,930124,992,030410
unplaced128,440,6542,158128,418,85461,2922180
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,728116,72816,72800
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