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SDE2 SDE2 telomere maintenance homolog [ Pan troglodytes (chimpanzee) ]

Gene ID: 457781, updated on 17-Aug-2024

Summary

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Official Symbol
SDE2provided by VGNC
Official Full Name
SDE2 telomere maintenance homologprovided by VGNC
Primary source
VGNC:VGNC:9899
Locus tag
CK820_G0040491
See related
Ensembl:ENSPTRG00000002044
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Also known as
C1orf55
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (23296737..23313987)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (208009350..208027262, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107970389 Neighboring gene histone cluster 1, H3a Neighboring gene uncharacterized LOC134808054 Neighboring gene NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3-like Neighboring gene left-right determination factor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing regulator SDE2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    23296737..23313987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_514239.7 → XP_514239.3  splicing regulator SDE2

    UniProtKB/TrEMBL
    A0A2J8K9D5, A0A6D2Y7W4, H2R827, K7DFY0
    Related
    ENSPTRP00000051106.4
    Conserved Domains (2) summary
    pfam13297
    Location:412 → 471
    Telomere_Sde2_2; Telomere stability C-terminal
    cl00155
    Location:96 → 171
    UBQ; Ubiquitin-like proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials