Format

Send to:

Choose Destination

ZNF829 zinc finger protein 829 [ Homo sapiens (human) ]

Gene ID: 374899, updated on 4-Jul-2021

Summary

Official Symbol
ZNF829provided by HGNC
Official Full Name
zinc finger protein 829provided by HGNC
Primary source
HGNC:HGNC:34032
See related
Ensembl:ENSG00000185869
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 3.5), ovary (RPKM 1.1) and 24 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See ZNF829 in Genome Data Viewer
Location:
19q13.12
Exon count:
7
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (36888124..36916387, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (37379026..37407193, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC728485 Neighboring gene ZNF790 antisense RNA 1 Neighboring gene zinc finger protein 790 Neighboring gene zinc finger protein 345 Neighboring gene ribosomal protein L31 pseudogene 61 Neighboring gene zinc finger protein 568 Neighboring gene zinc finger protein 420 Neighboring gene uncharacterized LOC105372390 Neighboring gene Sharpr-MPRA regulatory region 11816 Neighboring gene zinc finger protein 585A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ27459, MGC129866, MGC129867, DKFZp779O175, DKFZp686K21248

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001037232.4NP_001032309.2  zinc finger protein 829 isoform 2

    See identical proteins and their annotated locations for NP_001032309.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region, and uses a downstream start codon, compared to variant 1. The encoded isoform (2) is shorter at the N-terminus, compared to isoform 1.
    Source sequence(s)
    AC008733, BC107132, BX538288, DB031896
    Consensus CDS
    CCDS42557.1
    UniProtKB/Swiss-Prot
    Q3KNS6
    Related
    ENSP00000429266.1, ENST00000391711.8
    Conserved Domains (3) summary
    smart00349
    Location:3595
    KRAB; krueppel associated box
    COG5048
    Location:158344
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:214234
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001171979.2NP_001165450.1  zinc finger protein 829 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript but encodes the longer isoform (1).
    Source sequence(s)
    AC008733, BX538288
    Consensus CDS
    CCDS59380.1
    UniProtKB/Swiss-Prot
    Q3KNS6
    Related
    ENSP00000428679.2, ENST00000520965.5
    Conserved Domains (6) summary
    smart00349
    Location:116176
    KRAB; krueppel associated box
    COG5048
    Location:149425
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:295315
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:238259
    zf-C2H2; Zinc finger, C2H2 type
    pfam01352
    Location:116155
    KRAB; KRAB box
    pfam13465
    Location:335359
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    36888124..36916387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011526933.2XP_011525235.1  zinc finger protein 829 isoform X1

    See identical proteins and their annotated locations for XP_011525235.1

    UniProtKB/Swiss-Prot
    Q3KNS6
    Conserved Domains (3) summary
    smart00349
    Location:3595
    KRAB; krueppel associated box
    COG5048
    Location:158344
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:214234
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. XM_005258876.4XP_005258933.1  zinc finger protein 829 isoform X1

    See identical proteins and their annotated locations for XP_005258933.1

    UniProtKB/Swiss-Prot
    Q3KNS6
    Conserved Domains (3) summary
    smart00349
    Location:3595
    KRAB; krueppel associated box
    COG5048
    Location:158344
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:214234
    ZF_C2H2; C2H2 Zn finger [structural motif]
Support Center