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ZFP82 ZFP82 zinc finger protein [ Homo sapiens (human) ]

Gene ID: 284406, updated on 18-Aug-2020

Summary

Official Symbol
ZFP82provided by HGNC
Official Full Name
ZFP82 zinc finger proteinprovided by HGNC
Primary source
HGNC:HGNC:28682
See related
Ensembl:ENSG00000181007
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZNF545
Expression
Ubiquitous expression in thyroid (RPKM 1.5), brain (RPKM 1.3) and 24 other tissues See more
Orthologs

Genomic context

See ZFP82 in Genome Data Viewer
Location:
19q13.12
Exon count:
6
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (36383120..36418644, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (36882861..36909550, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 665 Neighboring gene ZFP14 zinc finger protein Neighboring gene acyl-CoA thioesterase 4 pseudogene Neighboring gene zinc finger protein 566 Neighboring gene uncharacterized LOC728752

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • KIAA1948, MGC45380

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II proximal promoter sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger protein 82 homolog
Names
zinc finger protein 545
zinc finger protein 85

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001321917.2NP_001308846.1  zinc finger protein 82 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC092296, AL707725, BX491216
    Conserved Domains (3) summary
    smart00349
    Location:666
    KRAB; krueppel associated box
    COG5048
    Location:144527
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:341361
    ZF_C2H2; C2H2 Zn finger [structural motif]
  2. NM_001321918.2NP_001308847.1  zinc finger protein 82 homolog isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC092296, BX491216
    Conserved Domains (2) summary
    smart00349
    Location:665
    KRAB; krueppel associated box
    pfam01352
    Location:645
    KRAB; KRAB box
  3. NM_001321919.2NP_001308848.1  zinc finger protein 82 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC092296, BX491216
    Conserved Domains (2) summary
    smart00349
    Location:665
    KRAB; krueppel associated box
    pfam01352
    Location:645
    KRAB; KRAB box
  4. NM_133466.4NP_597723.1  zinc finger protein 82 homolog isoform 1

    See identical proteins and their annotated locations for NP_597723.1

    Status: VALIDATED

    Source sequence(s)
    AC092296, AL707725, AL834267
    Consensus CDS
    CCDS12493.1
    UniProtKB/Swiss-Prot
    Q8N141
    UniProtKB/TrEMBL
    D3Y299
    Related
    ENSP00000431265.1, ENST00000392161.4
    Conserved Domains (3) summary
    smart00349
    Location:665
    KRAB; krueppel associated box
    COG5048
    Location:143526
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:340360
    ZF_C2H2; C2H2 Zn finger [structural motif]

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    36383120..36418644 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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