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SP5 Sp5 transcription factor [ Prionailurus bengalensis (leopard cat) ]

Gene ID: 122481440, updated on 22-Mar-2024

Summary

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Gene symbol
SP5
Gene description
Sp5 transcription factor
Gene type
protein coding
RefSeq status
MODEL
Organism
Prionailurus bengalensis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Prionailurus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: C1
Exon count:
2
Annotation release Status Assembly Chr Location
100 current Fcat_Pben_1.1_paternal_pri (GCF_016509475.1) C1 NC_057345.1 (160243960..160247422)

Chromosome C1 - NC_057345.1Genomic Context describing neighboring genes Neighboring gene myosin IIIB Neighboring gene 60S ribosomal protein L27a-like Neighboring gene U6 spliceosomal RNA Neighboring gene glutamate rich 2 Neighboring gene glutamate decarboxylase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_057345.1 Chromosome C1 Reference Fcat_Pben_1.1_paternal_pri Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor Sp5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Prionailurus bengalensis Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Fcat_Pben_1.1_paternal_pri Primary Assembly

Genomic

  1. NC_057345.1 Reference Fcat_Pben_1.1_paternal_pri Primary Assembly

    Range
    160243960..160247422
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_043577011.1 → XP_043432946.1  transcription factor Sp5

    Conserved Domains (5) summary
    COG5048
    Location:312 → 385
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:302 → 321
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:343 → 366
    zf-H2C2_2; Zinc-finger double domain
    cd22541
    Location:106 → 298
    SP5_N; N-terminal domain of transcription factor Specificity Protein (SP) 5
    cl41773
    Location:31 → 51
    SP1-4_N; N-terminal domain of transcription factor Specificity Proteins (SP) 1-4
Nucleotide Protein
Heading Accession and Version

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