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zbtb49 zinc finger and BTB domain containing 49 [ Esox lucius (northern pike) ]

Gene ID: 105016762, updated on 13-Mar-2024

Summary

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Gene symbol
zbtb49
Gene description
zinc finger and BTB domain containing 49
See related
EnsemblRapid:ENSELUG00000011132
Gene type
protein coding
RefSeq status
MODEL
Organism
Esox lucius
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
9
Annotation release Status Assembly Chr Location
104 current fEsoLuc1.pri (GCF_011004845.1) 17 NC_047585.1 (38613259..38624831)
103 previous assembly Eluc_v4 (GCF_004634155.1) Linkage Group LG17 NC_025984.4 (9919570..9931122, complement)

Chromosome 17 - NC_047585.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 128 Neighboring gene Ly1 antibody reactive homolog (mouse) Neighboring gene neuronal vesicle trafficking associated 1 Neighboring gene syntaxin 18

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger and BTB domain-containing protein 49

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Esox lucius Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fEsoLuc1.pri Primary Assembly

Genomic

  1. NC_047585.1 Reference fEsoLuc1.pri Primary Assembly

    Range
    38613259..38624831
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010880794.3 → XP_010879096.1  zinc finger and BTB domain-containing protein 49

    UniProtKB/TrEMBL
    A0A3P8ZW96
    Conserved Domains (4) summary
    COG5048
    Location:444 → 604
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:210 → 527
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:15 → 118
    BTB; BTB/POZ domain

  2. XM_020055169.2 → XP_019910728.1  zinc finger and BTB domain-containing protein 49

    UniProtKB/TrEMBL
    A0A3P8ZW96
    Related
    ENSELUP00000033002.1, ENSELUT00000001762.3
    Conserved Domains (4) summary
    COG5048
    Location:444 → 604
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:210 → 527
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:420 → 440
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:15 → 118
    BTB; BTB/POZ domain
Nucleotide Protein
Heading Accession and Version

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