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PRDM7 PR/SET domain 7 [ Physeter catodon (sperm whale) ]

Gene ID: 102974760, updated on 10-Mar-2024

Summary

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Gene symbol
PRDM7
Gene description
PR/SET domain 7
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human all
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Genomic context

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Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 17 NC_041230.1 (55737480..55750224, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 17 NC_041230.1 (55737480..55750224, complement)

Chromosome 17 - NC_041230.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC114484060 Neighboring gene growth arrest specific 8 Neighboring gene uncharacterized LOC114484013

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K36 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H3K4 methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables recombination hotspot binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of reciprocal meiotic recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone-lysine N-methyltransferase PRDM7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041230.1 Reference ASM283717v5 Primary Assembly

    Range
    55737480..55750224 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028477556.1 → XP_028333357.1  histone-lysine N-methyltransferase PRDM7

    UniProtKB/TrEMBL
    A0A455ABG0
    Conserved Domains (7) summary
    smart00317
    Location:212 → 322
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:495 → 565
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:512 → 532
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam09514
    Location:130 → 159
    SSXRD; SSXRD motif
    pfam00096
    Location:566 → 588
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:580 → 604
    zf-H2C2_2; Zinc-finger double domain
    cl02581
    Location:3 → 43
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
Nucleotide Protein
Heading Accession and Version

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