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Thbs1 thrombospondin 1 [ Chinchilla lanigera (long-tailed chinchilla) ]

Gene ID: 102010897, updated on 10-Mar-2024

Summary

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Gene symbol
Thbs1
Gene description
thrombospondin 1
See related
Ensembl:ENSCLAG00000010506
Gene type
protein coding
RefSeq status
MODEL
Organism
Chinchilla lanigera
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Chinchillidae; Chinchilla
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
101 current ChiLan1.0 (GCF_000276665.1) Unplaced Scaffold NW_004955416.1 (6490034..6506419)

NW_004955416.1Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2915 Neighboring gene uncharacterized LOC102010579 Neighboring gene fibrous sheath interacting protein 1 Neighboring gene G protein-coupled receptor 176

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004955416.1 Unplaced Scaffold Reference ChiLan1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
thrombospondin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Chinchilla lanigera Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ChiLan1.0 Primary Assembly

Genomic

  1. NW_004955416.1 Reference ChiLan1.0 Primary Assembly

    Range
    6490034..6506419
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013512591.1 → XP_013368045.1  thrombospondin-1

    UniProtKB/TrEMBL
    A0A8C2VN60
    Related
    ENSCLAP00000015259.1, ENSCLAT00000015419.1
    Conserved Domains (10) summary
    smart00209
    Location:439 → 491
    TSP1; Thrombospondin type 1 repeats
    smart00210
    Location:26 → 221
    TSPN; Thrombospondin N-terminal -like domains
    sd00001
    Location:846 → 883
    TSP3; TSP3 repeat_long [structural motif]
    sd00002
    Location:788 → 822
    TSP3; TSP3 repeat_long [structural motif]
    sd00003
    Location:692 → 727
    TSP3_1C; TSP3 repeat_1C [structural motif]
    pfam00090
    Location:384 → 429
    TSP_1; Thrombospondin type 1 domain
    pfam00093
    Location:319 → 373
    VWC; von Willebrand factor type C domain
    pfam02412
    Location:847 → 883
    TSP_3; Thrombospondin type 3 repeat
    pfam05735
    Location:973 → 1170
    TSP_C; Thrombospondin C-terminal region
    pfam12947
    Location:651 → 690
    EGF_3; EGF domain
Nucleotide Protein
Heading Accession and Version

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