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Epha10 EPH receptor A10 [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101833627, updated on 11-Apr-2024

Summary

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Gene symbol
Epha10
Gene description
EPH receptor A10
See related
EnsemblRapid:ENSMAUG00000019172
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429197.1 (18185086..18237621, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801770.1 (2061667..2099220)

NW_024429197.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121144085 Neighboring gene AFG2 interacting ribosome maturation factor Neighboring gene cell division cycle associated 8 Neighboring gene mannosidase endo-alpha like Neighboring gene yrdC N6-threonylcarbamoyltransferase domain containing

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transmembrane-ephrin receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell surface receptor protein tyrosine kinase signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ephrin type-A receptor 10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429197.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    18185086..18237621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005084364.4 → XP_005084421.1  ephrin type-A receptor 10 isoform X1

    UniProtKB/TrEMBL
    A0A1U7RA42
    Related
    ENSMAUP00000021434.1, ENSMAUT00000025430.2
    Conserved Domains (8) summary
    cd09549
    Location:928 → 997
    SAM_EPH-A10; SAM domain of EPH-A10 subfamily of tyrosine kinase receptors
    smart00454
    Location:931 → 996
    SAM; Sterile alpha motif
    smart00060
    Location:338 → 431
    FN3; Fibronectin type 3 domain
    cd00063
    Location:451 → 551
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    pfam07714
    Location:644 → 899
    Pkinase_Tyr; Protein tyrosine kinase
    pfam14575
    Location:573 → 639
    EphA2_TM; Ephrin type-A receptor 2 transmembrane domain
    cl02704
    Location:35 → 210
    EphR_LBD; Ligand Binding Domain of Ephrin Receptors
    cl21453
    Location:638 → 902
    PKc_like; Protein Kinases, catalytic domain

  2. XM_040756672.1 → XP_040612606.1  ephrin type-A receptor 10 isoform X2

    Conserved Domains (2) summary
    smart00060
    Location:338 → 431
    FN3; Fibronectin type 3 domain
    cl02704
    Location:35 → 210
    EphR_LBD; Ligand Binding Domain of Ephrin Receptors

RNA

  1. XR_005881259.1 RNA Sequence

  2. XR_005881260.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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