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MesAur1.0

Organism name:
Mesocricetus auratus (golden hamster)
Isolate:
Golden Hamster female 1
Sex:
female
BioSample:
SAMN00769068
BioProject:
PRJNA77669
Submitter:
Broad Institute
Date:
2013/03/29
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000349665.1 (latest)
RefSeq assembly accession:
GCF_000349665.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
APMT01
Assembly method:
allpaths v. R44683
Genome coverage:
115x
Sequencing technology:
Illumina HiSeq

IDs: 562298 [UID] 562298 [GenBank] 734178 [RefSeq]

See Genome Information for Mesocricetus auratus

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Eric Bittman, University of Massachusetts, Amherst.

Global statistics

Total sequence length2,504,925,039
Total assembly gap length428,748,785
Gaps between scaffolds0
Number of scaffolds21,484
Scaffold N5012,753,307
Scaffold L5057
Number of contigs237,700
Contig N5022,511
Contig L5025,785
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)237,700

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,504,908,77521,4832,076,159,99012,753,307216,2160
MoleculeTotal
Length
Mitochondrion MT16,264
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