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EGR1 early growth response 1 [ Ailuropoda melanoleuca (giant panda) ]

Gene ID: 100483196, updated on 8-Mar-2024

Summary

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Gene symbol
EGR1
Gene description
early growth response 1
Locus tag
PANDA_011792
See related
Ensembl:ENSAMEG00000027722
Gene type
protein coding
RefSeq status
MODEL
Organism
Ailuropoda melanoleuca
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Ursidae; Ailuropoda
Orthologs
human mouse all
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Genomic context

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See EGR1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
103 current ASM200744v2 (GCF_002007445.1) 3 NC_048220.1 (26826263..26830063)
102 previous assembly AilMel_1.0 (GCF_000004335.2) Unplaced Scaffold NW_003217890.1 (768091..771814)

Chromosome 3 - NC_048220.1Genomic Context describing neighboring genes Neighboring gene lysine demethylase 3B Neighboring gene receptor accessory protein 2 Neighboring gene eukaryotic translation termination factor 1 Neighboring gene small nucleolar RNA SNORD63 Neighboring gene heat shock protein family A (Hsp70) member 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The sequence and de novo assembly of the giant panda genome. Li R, et al. Nature, 2010 Jan 21. PMID 20010809, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
early growth response protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Ailuropoda melanoleuca Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM200744v2 Primary Assembly

Genomic

  1. NC_048220.1 Reference ASM200744v2 Primary Assembly

    Range
    26826263..26830063
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002922729.4 → XP_002922775.1  early growth response protein 1

    See identical proteins and their annotated locations for XP_002922775.1

    UniProtKB/TrEMBL
    D2HK98
    Related
    ENSAMEP00000027192.1, ENSAMET00000046792.1
    Conserved Domains (7) summary
    COG5048
    Location:363 → 474
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:338 → 360
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:336 → 360
    zf-C2H2; Zinc finger, C2H2 type
    pfam05687
    Location:450 → 503
    BES1_N; BES1/BZR1 plant transcription factor, N-terminal
    pfam11914
    Location:445 → 528
    DUF3432; Domain of unknown function (DUF3432)
    pfam11928
    Location:132 → 207
    DUF3446; Domain of unknown function (DUF3446)
    pfam13465
    Location:380 → 405
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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