5GAD: RNC-SRP-SR complex early state

PDB ID: 5GADDownload
MMDB ID: 136083
PDB Deposition Date: 2015/11/24
Updated in MMDB: 2019/12
Experimental Method:
electron microscopy
Resolution: 3.7  Å
Source Organism:
Similar Structures:
Biological Unit for 5GAD: 37-meric; determined by author and by software (PISA)
Molecular Components in 5GAD
Label Count Molecule
Proteins (33 molecules)
1
50S Ribosomal Protein L2
(Gene symbol: rplB)
Molecule annotation
1
50S Ribosomal Protein L3
(Gene symbol: rplC)
Molecule annotation
1
50S Ribosomal Protein L4
(Gene symbol: rplD)
Molecule annotation
1
50S Ribosomal Protein L5
(Gene symbol: rplE)
Molecule annotation
1
50S Ribosomal Protein L6
(Gene symbol: rplF)
Molecule annotation
1
50S Ribosomal Protein L9
(Gene symbol: rplI)
Molecule annotation
1
50S Ribosomal Protein L10
(Gene symbol: rplJ)
Molecule annotation
1
50S Ribosomal Protein L11
(Gene symbol: rplK)
Molecule annotation
1
50S Ribosomal Protein L13
(Gene symbol: rplM)
Molecule annotation
1
50S Ribosomal Protein L14
(Gene symbol: rplN)
Molecule annotation
1
50S Ribosomal Protein L15
(Gene symbol: rplO)
Molecule annotation
1
50S Ribosomal Protein L16
(Gene symbol: rplP)
Molecule annotation
1
50S Ribosomal Protein L17
(Gene symbol: rplQ)
Molecule annotation
1
50S Ribosomal Protein L18
(Gene symbol: rplR)
Molecule annotation
1
50S Ribosomal Protein L19
(Gene symbol: rplS)
Molecule annotation
1
50S Ribosomal Protein L20
(Gene symbol: rplT)
Molecule annotation
1
50S Ribosomal Protein L21
(Gene symbol: rplU)
Molecule annotation
1
50S Ribosomal Protein L22
(Gene symbol: rplV)
Molecule annotation
1
50S Ribosomal Protein L23
(Gene symbol: rplW)
Molecule annotation
1
50S Ribosomal Protein L24
(Gene symbol: rplX)
Molecule annotation
1
50S Ribosomal Protein L25
(Gene symbol: rplY)
Molecule annotation
1
50S Ribosomal Protein L27
(Gene symbol: rpmA)
Molecule annotation
1
50S Ribosomal Protein L28
(Gene symbol: rpmB)
Molecule annotation
1
50S Ribosomal Protein L29
(Gene symbol: rpmC)
Molecule annotation
1
50S Ribosomal Protein L30
(Gene symbol: rpmD)
Molecule annotation
1
50S Ribosomal Protein L32
(Gene symbol: rpmF)
Molecule annotation
1
50S Ribosomal Protein L33
(Gene symbol: rpmG)
Molecule annotation
1
50S Ribosomal Protein L34
(Gene symbol: rpmH)
Molecule annotation
1
50S Ribosomal Protein L35
(Gene symbol: rpmI)
Molecule annotation
1
50S Ribosomal Protein L36
(Gene symbol: rpmJ)
Molecule annotation
1
Signal Recognition Particle Protein FFH
Molecule annotation
1
1a9l SS
Molecule annotation
1
Signal Recognition Particle Receptor Ftsy
(Gene symbol: ftsY)
Molecule annotation
Nucleotides(4 molecules)
1
Esrp 4.5s RNA
Molecule annotation
1
tRNA Ccaend
Molecule annotation
1
23S rRNA
Molecule annotation
1
5S rRNA
Molecule annotation
Chemicals and Non-standard biopolymers (436 molecules)
1
433
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
2
1
ZINC ION (Link to PubChem not yet available)ZINC ION
3
2
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER (Link to PubChem not yet available)PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303