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LOC6608537 longitudinals lacking protein [ Drosophila sechellia ]

Gene ID: 6608537, updated on 10-May-2024

Summary

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Gene symbol
LOC6608537
Gene description
longitudinals lacking protein
Locus tag
Dsec_GM20503
See related
EnsemblRapid:LOC6608537
Gene type
protein coding
RefSeq status
MODEL
Organism
Drosophila sechellia
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
GM20503; GM20504; GM20505; GM20506; GM20508; GM20509; GM20511; GM20512; GM20513; GM20514; GM20515; GM20517; GM20503-PA; GM20504-PA; GM20505-PA; GM20506-PA; GM20508-PA; GM20509-PA; GM20511-PA; GM20512-PA; GM20513-PA; GM20514-PA; GM20515-PA; GM20517-PA
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 2R
Exon count:
29
Annotation release Status Assembly Chr Location
101 current ASM438219v1 (GCF_004382195.1) 2R NC_045950.1 (6700371..6760350, complement)

Chromosome 2R - NC_045950.1Genomic Context describing neighboring genes Neighboring gene translin Neighboring gene peflin Neighboring gene uncharacterized LOC116800298 Neighboring gene uncharacterized LOC116800299 Neighboring gene uncharacterized LOC116800300 Neighboring gene broad-complex core protein Neighboring gene squamosa promoter-binding-like protein 2 Neighboring gene mannosylglucosyl-3-phosphoglycerate phosphatase Neighboring gene ARF GTPase-activating protein GIT1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_045950.1 Chromosome 2R Reference ASM438219v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
longitudinals lacking protein; longitudinals lacking protein, isoforms A/B/D/L; longitudinals lacking protein, isoforms F/I/K/T; longitudinals lacking protein, isoforms H/M/V; longitudinals lacking protein, isoforms J/P/Q/S/Z; longitudinals lacking protein, isoforms N/O/W/X/Y
Names
Dsec\GM20503
Dsec\GM20503-PA
Dsec\GM20504
Dsec\GM20504-PA
Dsec\GM20505
Dsec\GM20505-PA
Dsec\GM20506
Dsec\GM20506-PA
Dsec\GM20508
Dsec\GM20508-PA
Dsec\GM20509
Dsec\GM20509-PA
Dsec\GM20511
Dsec\GM20511-PA
Dsec\GM20512
Dsec\GM20512-PA
Dsec\GM20513
Dsec\GM20513-PA
Dsec\GM20514
Dsec\GM20514-PA
Dsec\GM20515
Dsec\GM20515-PA
Dsec\GM20517
Dsec\GM20517-PA
dsec_GLEANR_3323
dsec_GLEANR_3324
dsec_GLEANR_3325
dsec_GLEANR_3326
dsec_GLEANR_3328
dsec_GLEANR_3329
dsec_GLEANR_3330
dsec_GLEANR_3331
dsec_GLEANR_3332
dsec_GLEANR_3333
dsec_GLEANR_3334
dsec_GLEANR_3336

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Drosophila sechellia Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM438219v1

Genomic

  1. NC_045950.1 Reference ASM438219v1

    Range
    6700371..6760350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_032714271.1 → XP_032570162.1  longitudinals lacking protein isoform X3

    Related
    XP_032570162.1, XM_032714271.1
    Conserved Domains (3) summary
    sd00017
    Location:798 → 818
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam13909
    Location:826 → 849
    zf-H2C2_5; C2H2-type zinc-finger domain

  2. XM_032714281.1 → XP_032570172.1  longitudinals lacking protein, isoforms H/M/V isoform X14

    Related
    XP_032570172.1, XM_032714281.1
    Conserved Domains (1) summary
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  3. XM_032714284.1 → XP_032570175.1  longitudinals lacking protein, isoforms N/O/W/X/Y isoform X17

    Related
    XP_032570175.1, XM_032714284.1
    Conserved Domains (4) summary
    PLN00104
    Location:404 → 515
    PLN00104; MYST -like histone acetyltransferase; Provisional
    sd00017
    Location:468 → 486
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam13894
    Location:495 → 517
    zf-C2H2_4; C2H2-type zinc finger

  4. XM_032714273.1 → XP_032570164.1  longitudinals lacking protein, isoforms N/O/W/X/Y isoform X5

    Related
    XP_032570164.1, XM_032714273.1
    Conserved Domains (3) summary
    sd00019
    Location:714 → 734
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam00096
    Location:742 → 764
    zf-C2H2; Zinc finger, C2H2 type

  5. XM_032714277.1 → XP_032570168.1  longitudinals lacking protein, isoforms H/M/V isoform X9

    Related
    XP_032570168.1, XM_032714277.1
    Conserved Domains (2) summary
    sd00017
    Location:532 → 552
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  6. XM_032714278.1 → XP_032570169.1  longitudinals lacking protein, isoforms H/M/V isoform X10

    Related
    XP_032570169.1, XM_032714278.1
    Conserved Domains (2) summary
    sd00017
    Location:531 → 551
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  7. XM_032714274.1 → XP_032570165.1  longitudinals lacking protein, isoforms H/M/V isoform X6

    Related
    XP_032570165.1, XM_032714274.1
    Conserved Domains (3) summary
    sd00017
    Location:703 → 723
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam00096
    Location:730 → 752
    zf-C2H2; Zinc finger, C2H2 type

  8. XM_032714294.1 → XP_032570185.1  longitudinals lacking protein, isoforms J/P/Q/S/Z isoform X25

    Related
    XP_032570185.1, XM_032714294.1
    Conserved Domains (1) summary
    sd00017
    Location:373 → 393
    ZF_C2H2; C2H2 Zn finger [structural motif]

  9. XM_032714270.1 → XP_032570161.1  longitudinals lacking protein, isoforms J/P/Q/S/Z isoform X2

    Related
    XP_032570161.1, XM_032714270.1
    Conserved Domains (2) summary
    sd00017
    Location:848 → 868
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  10. XM_032714293.1 → XP_032570184.1  longitudinals lacking protein, isoforms J/P/Q/S/Z isoform X24

    Related
    XP_032570184.1, XM_032714293.1
    Conserved Domains (1) summary
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  11. XM_032714272.1 → XP_032570163.1  longitudinals lacking protein, isoforms A/B/D/L isoform X4

    Related
    XP_032570163.1, XM_032714272.1
    Conserved Domains (3) summary
    sd00019
    Location:688 → 708
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam00096
    Location:686 → 706
    zf-C2H2; Zinc finger, C2H2 type

  12. XM_032714269.1 → XP_032570160.1  longitudinals lacking protein, isoforms F/I/K/T isoform X1

    Related
    XP_032570160.1, XM_032714269.1
    Conserved Domains (3) summary
    sd00017
    Location:907 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam13909
    Location:937 → 959
    zf-H2C2_5; C2H2-type zinc-finger domain

  13. XM_032714267.1 → XP_032570158.1  longitudinals lacking protein, isoforms F/I/K/T isoform X1

    Related
    XP_032570158.1, XM_032714267.1
    Conserved Domains (3) summary
    sd00017
    Location:907 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam13909
    Location:937 → 959
    zf-H2C2_5; C2H2-type zinc-finger domain

  14. XM_032714268.1 → XP_032570159.1  longitudinals lacking protein, isoforms F/I/K/T isoform X1

    Related
    XP_032570159.1, XM_032714268.1
    Conserved Domains (3) summary
    sd00017
    Location:907 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam13909
    Location:937 → 959
    zf-H2C2_5; C2H2-type zinc-finger domain

  15. XM_032714266.1 → XP_032570157.1  longitudinals lacking protein, isoforms F/I/K/T isoform X1

    Related
    XP_032570157.1, XM_032714266.1
    Conserved Domains (3) summary
    sd00017
    Location:907 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam13909
    Location:937 → 959
    zf-H2C2_5; C2H2-type zinc-finger domain

  16. XM_032714285.1 → XP_032570176.1  longitudinals lacking protein isoform X18

    Related
    XP_032570176.1, XM_032714285.1
    Conserved Domains (2) summary
    sd00019
    Location:482 → 502
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  17. XM_032714282.1 → XP_032570173.1  longitudinals lacking protein, isoforms H/M/V isoform X15

    Related
    XP_032570173.1, XM_032714282.1
    Conserved Domains (1) summary
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  18. XM_032714283.1 → XP_032570174.1  longitudinals lacking protein, isoforms H/M/V isoform X16

    Related
    XP_032570174.1, XM_032714283.1
    Conserved Domains (1) summary
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  19. XM_032714288.1 → XP_032570179.1  longitudinals lacking protein, isoforms H/M/V isoform X19

    Related
    XP_032570179.1, XM_032714288.1
    Conserved Domains (4) summary
    PHA00733
    Location:487 → 565
    PHA00733; hypothetical protein
    sd00017
    Location:509 → 531
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam00096
    Location:538 → 557
    zf-C2H2; Zinc finger, C2H2 type

  20. XM_032714289.1 → XP_032570180.1  longitudinals lacking protein, isoforms H/M/V isoform X20

    Related
    XP_032570180.1, XM_032714289.1
    Conserved Domains (1) summary
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  21. XM_032714291.1 → XP_032570182.1  longitudinals lacking protein, isoforms A/B/D/L isoform X22

    Related
    XP_032570182.1, XM_032714291.1
    Conserved Domains (4) summary
    sd00019
    Location:467 → 490
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam00096
    Location:465 → 485
    zf-C2H2; Zinc finger, C2H2 type
    pfam13909
    Location:497 → 519
    zf-H2C2_5; C2H2-type zinc-finger domain

  22. XM_032714290.1 → XP_032570181.1  longitudinals lacking protein, isoforms H/M/V isoform X21

    Related
    XP_032570181.1, XM_032714290.1
    Conserved Domains (1) summary
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  23. XM_032714275.1 → XP_032570166.1  longitudinals lacking protein, isoforms H/M/V isoform X7

    Related
    XP_032570166.1, XM_032714275.1
    Conserved Domains (4) summary
    sd00017
    Location:483 → 503
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam00096
    Location:481 → 501
    zf-C2H2; Zinc finger, C2H2 type
    pfam13894
    Location:511 → 534
    zf-C2H2_4; C2H2-type zinc finger

  24. XM_032714279.1 → XP_032570170.1  longitudinals lacking protein, isoforms H/M/V isoform X11

    Related
    XP_032570170.1, XM_032714279.1
    Conserved Domains (1) summary
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins

  25. XM_032714276.1 → XP_032570167.1  longitudinals lacking protein, isoforms H/M/V isoform X8

    Related
    XP_032570167.1, XM_032714276.1
    Conserved Domains (3) summary
    sd00017
    Location:531 → 548
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam05605
    Location:527 → 581
    zf-Di19; Drought induced 19 protein (Di19), zinc-binding

  26. XM_032714280.1 → XP_032570171.1  longitudinals lacking protein, isoforms H/M/V isoform X13

    Related
    XP_032570171.1, XM_032714280.1
    Conserved Domains (3) summary
    sd00019
    Location:553 → 573
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
    pfam00096
    Location:580 → 604
    zf-C2H2; Zinc finger, C2H2 type

  27. XM_002033235.2 → XP_002033271.1  longitudinals lacking protein, isoforms H/M/V isoform X12

    See identical proteins and their annotated locations for XP_002033271.1

    UniProtKB/TrEMBL
    B4HMS2
    Related
    XP_002033271.1, XM_002033235.2
    Conserved Domains (4) summary
    smart00225
    Location:33 → 117
    BTB; Broad-Complex, Tramtrack and Bric a brac
    sd00017
    Location:555 → 573
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00651
    Location:22 → 117
    BTB; BTB/POZ domain
    pfam13465
    Location:568 → 593
    zf-H2C2_2; Zinc-finger double domain

  28. XM_032714292.1 → XP_032570183.1  longitudinals lacking protein, isoforms H/M/V isoform X23

    Related
    XP_032570183.1, XM_032714292.1
    Conserved Domains (1) summary
    cd18315
    Location:31 → 114
    BTB_POZ_BAB-like; BTB (Broad-Complex, Tramtrack and Bric a brac) /POZ (poxvirus and zinc finger) domain found in Drosophila melanogaster proteins bric-a-brac 1 (BAB1), bric-a-brac 2 (BAB2), modifier of mdg4 (doom), and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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