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    lrrn3 leucine rich repeat neuronal 3 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 779981, updated on 5-Mar-2024

    Summary

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    Official Symbol
    lrrn3provided by Xenbase
    Official Full Name
    leucine rich repeat neuronal 3provided by Xenbase
    Primary source
    Xenbase:XB-GENE-490955
    See related
    Ensembl:ENSXETG00000032850
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    nlrr3; nlrr-3
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (66070846..66115024)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (56500728..56544832)

    Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene DnaJ heat shock protein family (Hsp40) member B9 Neighboring gene THAP domain containing 5 Neighboring gene inner mitochondrial membrane peptidase subunit 2 Neighboring gene C-C chemokine receptor type 4 Neighboring gene dedicator of cytokinesis 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC146637

    Gene Ontology Provided by Xenbase

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    leucine-rich repeat neuronal protein 3
    Names
    leucine rich repeat protein 3, neuronal

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079058.1 → NP_001072526.1  leucine-rich repeat neuronal protein 3 precursor

      See identical proteins and their annotated locations for NP_001072526.1

      Status: PROVISIONAL

      Source sequence(s)
      BC121979
      UniProtKB/TrEMBL
      F6V9C2, Q0D2D1
      Related
      ENSXETP00000053675.3, ENSXETT00000053675.4
      Conserved Domains (6) summary
      smart00408
      Location:437 → 503
      IGc2; Immunoglobulin C-2 Type
      pfam07679
      Location:429 → 513
      I-set; Immunoglobulin I-set domain
      sd00031
      Location:336 → 359
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:94 → 117
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:120 → 176
      LRR_8; Leucine rich repeat
      cl15307
      Location:368 → 419
      TPKR_C2; Tyrosine-protein kinase receptor C2 Ig-like domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      66070846..66115024
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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