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ZCCHC9 zinc finger CCHC-type containing 9 [ Homo sapiens (human) ]

Gene ID: 84240, updated on 24-Nov-2020

Summary

Official Symbol
ZCCHC9provided by HGNC
Official Full Name
zinc finger CCHC-type containing 9provided by HGNC
Primary source
HGNC:HGNC:25424
See related
Ensembl:ENSG00000131732
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PPP1R41
Expression
Ubiquitous expression in placenta (RPKM 8.9), appendix (RPKM 8.7) and 25 other tissues See more
Orthologs

Genomic context

See ZCCHC9 in Genome Data Viewer
Location:
5q14.1
Exon count:
6
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (81301587..81313297)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (80597402..80608966)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986359 Neighboring gene Ras protein specific guanine nucleotide releasing factor 2 Neighboring gene CKMT2 antisense RNA 1 Neighboring gene creatine kinase, mitochondrial 2 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene single stranded DNA binding protein 2 Neighboring gene CRISPRi-validated cis-regulatory element chr5.2009

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • DKFZp761J139

Gene Ontology Provided by GOA

Function Evidence Code Pubs
RNA binding HDA PubMed 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
negative regulation of phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
negative regulation of phosphatase activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
zinc finger CCHC domain-containing protein 9
Names
protein phosphatase 1, regulatory subunit 41
zinc finger, CCHC domain containing 9

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001131035.2NP_001124507.1  zinc finger CCHC domain-containing protein 9

    See identical proteins and their annotated locations for NP_001124507.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate splice site, which results in a shorter 5' UTR, as compared to variant 1.
    Source sequence(s)
    AC008411, AI961614, BC032736, BG776648, CB126982
    Consensus CDS
    CCDS4054.1
    UniProtKB/Swiss-Prot
    Q8N567
    UniProtKB/TrEMBL
    A0A024RAL5
    Related
    ENSP00000385047.3, ENST00000407610.8
    Conserved Domains (1) summary
    PTZ00368
    Location:130229
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
  2. NM_001131036.2NP_001124508.1  zinc finger CCHC domain-containing protein 9

    See identical proteins and their annotated locations for NP_001124508.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) has an alternate splice site, which results in a shorter 5' UTR, as compared to variant 1.
    Source sequence(s)
    AC008411, AI961614, BC032736, BG776648, CN261947
    Consensus CDS
    CCDS4054.1
    UniProtKB/Swiss-Prot
    Q8N567
    UniProtKB/TrEMBL
    A0A024RAL5
    Related
    ENSP00000369546.5, ENST00000380199.9
    Conserved Domains (1) summary
    PTZ00368
    Location:130229
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
  3. NM_032280.3NP_115656.1  zinc finger CCHC domain-containing protein 9

    See identical proteins and their annotated locations for NP_115656.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longest transcript. Variants 1-3 encode the same protein.
    Source sequence(s)
    AC008411, AI961614, AK314160, BC022799, BC032736, BG776648
    Consensus CDS
    CCDS4054.1
    UniProtKB/Swiss-Prot
    Q8N567
    UniProtKB/TrEMBL
    A0A024RAL5
    Related
    ENSP00000412637.2, ENST00000438268.2
    Conserved Domains (1) summary
    PTZ00368
    Location:130229
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    81301587..81313297
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005248616.3XP_005248673.1  zinc finger CCHC domain-containing protein 9 isoform X1

    See identical proteins and their annotated locations for XP_005248673.1

    Related
    ENST00000506458.5
    Conserved Domains (1) summary
    PTZ00368
    Location:278
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
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