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Zcchc9 zinc finger, CCHC domain containing 9 [ Mus musculus (house mouse) ]

Gene ID: 69085, updated on 5-Mar-2024

Summary

Official Symbol
Zcchc9provided by MGI
Official Full Name
zinc finger, CCHC domain containing 9provided by MGI
Primary source
MGI:MGI:1916335
See related
Ensembl:ENSMUSG00000021621 AllianceGenome:MGI:1916335
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810019C21Rik
Summary
Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be located in nucleolus and nucleoplasm. Orthologous to human ZCCHC9 (zinc finger CCHC-type containing 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 7.5), limb E14.5 (RPKM 6.8) and 28 other tissues See more
Orthologs
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Genomic context

See Zcchc9 in Genome Data Viewer
Location:
13 C3; 13 47.43 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (91944652..91955824, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (91796519..91807718, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4833422C13 gene Neighboring gene predicted gene, 22778 Neighboring gene acyl-CoA thioesterase 12 Neighboring gene STARR-seq mESC enhancer starr_35256 Neighboring gene STARR-positive B cell enhancer ABC_E5409 Neighboring gene STARR-positive B cell enhancer ABC_E4085 Neighboring gene STARR-seq mESC enhancer starr_35257 Neighboring gene STARR-seq mESC enhancer starr_35258 Neighboring gene creatine kinase, mitochondrial 2 Neighboring gene RAS protein-specific guanine nucleotide-releasing factor 2 Neighboring gene predicted gene, 46435

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
zinc finger CCHC domain-containing protein 9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145453.2NP_663428.2  zinc finger CCHC domain-containing protein 9

    Status: VALIDATED

    Source sequence(s)
    BB291225, BB656071, BC024496
    Consensus CDS
    CCDS36742.1
    UniProtKB/Swiss-Prot
    E9QQ14, Q8R1J3, Q921T6
    Related
    ENSMUSP00000022121.7, ENSMUST00000022121.13
    Conserved Domains (1) summary
    PTZ00368
    Location:130229
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    91944652..91955824 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006517361.5XP_006517424.1  zinc finger CCHC domain-containing protein 9 isoform X1

    UniProtKB/TrEMBL
    Q8BRH8
    Conserved Domains (1) summary
    PTZ00368
    Location:130211
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional
  2. XM_017315591.3XP_017171080.1  zinc finger CCHC domain-containing protein 9 isoform X2

    Conserved Domains (1) summary
    PTZ00368
    Location:4103
    PTZ00368; universal minicircle sequence binding protein (UMSBP); Provisional

RNA

  1. XR_003950474.2 RNA Sequence

  2. XR_004938065.1 RNA Sequence