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CHD9 chromodomain helicase DNA binding protein 9 [ Homo sapiens (human) ]

Gene ID: 80205, updated on 22-Aug-2021

Summary

Official Symbol
CHD9provided by HGNC
Official Full Name
chromodomain helicase DNA binding protein 9provided by HGNC
Primary source
HGNC:HGNC:25701
See related
Ensembl:ENSG00000177200 MIM:616936
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
AD013; CHD-9; CReMM; KISH2; PRIC320
Expression
Ubiquitous expression in thyroid (RPKM 7.0), ovary (RPKM 6.1) and 25 other tissues See more
Orthologs
NEW
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Try the new Transcript table

Genomic context

See CHD9 in Genome Data Viewer
Location:
16q12.2
Exon count:
55
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (53054982..53327502)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (53088903..53361409)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene mitochondrial carrier 2 pseudogene Neighboring gene uncharacterized LOC105371267 Neighboring gene thyroid hormone receptor interactor 13 pseudogene Neighboring gene thyroid hormone receptor interactor 13 pseudogene Neighboring gene RNA, 5S ribosomal pseudogene 427 Neighboring gene caskin-1-like

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Multiethnic meta-analysis of genome-wide association studies in >100 000 subjects identifies 23 fibrinogen-associated Loci but no strong evidence of a causal association between circulating fibrinogen and cardiovascular disease.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytosol IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm IDA
Inferred from Direct Assay
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
chromodomain-helicase-DNA-binding protein 9
Names
ATP-dependent helicase CHD9
PPAR-alpha-interacting complex protein 320 kDa
PPAR{gamma}-interacting cofactor 320 kDa
chromatin remodeling factor CHROM1
chromatin-related mesenchymal modulator
ciprofibrate bound protein p240
kismet homolog 2
peroxisomal proliferator-activated receptor A-interacting complex 320 kDa protein
proteinx0008
NP_001295248.1
NP_001339056.1
NP_001339085.1
NP_001339086.1
NP_001339087.1
NP_001369282.1
NP_001369283.1
NP_001369284.1
NP_079410.4
XP_005256225.1
XP_005256226.1
XP_006721344.1
XP_006721346.1
XP_011521649.1
XP_016879207.1
XP_016879208.1
XP_016879209.1
XP_016879210.1
XP_016879211.1
XP_016879212.1
XP_016879213.1
XP_016879214.1
XP_024306227.1
XP_024306228.1
XP_024306229.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001308319.2NP_001295248.1  chromodomain-helicase-DNA-binding protein 9 isoform 1

    See identical proteins and their annotated locations for NP_001295248.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1). Variants 1 and 7 both encode the same isoform (1).
    Source sequence(s)
    AC007906, AC079416
    Consensus CDS
    CCDS76865.1
    UniProtKB/Swiss-Prot
    Q3L8U1
    Related
    ENSP00000396345.2, ENST00000447540.6
    Conserved Domains (6) summary
    smart00592
    Location:25562600
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:8111480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:176362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    COG5641
    Location:161558
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd18663
    Location:770828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
  2. NM_001352127.3NP_001339056.1  chromodomain-helicase-DNA-binding protein 9 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3), as well as variant 2, encodes isoform 2.
    Source sequence(s)
    AC007906, AC079416
    Consensus CDS
    CCDS45485.1
    Related
    ENSP00000455307.1, ENST00000564845.5
    Conserved Domains (6) summary
    smart00592
    Location:25402584
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  3. NM_001352156.3NP_001339085.1  chromodomain-helicase-DNA-binding protein 9 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC007906, AC079416
    Related
    ENSP00000457355.2, ENST00000565803.2
    Conserved Domains (4) summary
    smart00592
    Location:20832127
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:218278
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:299353
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    cl26465
    Location:3371006
    SNF2_N; SNF2 family N-terminal domain
  4. NM_001352157.3NP_001339086.1  chromodomain-helicase-DNA-binding protein 9 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC007906, AC079416
    Conserved Domains (4) summary
    smart00592
    Location:20672111
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:218278
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:299353
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    cl26465
    Location:3371006
    SNF2_N; SNF2 family N-terminal domain
  5. NM_001352158.3NP_001339087.1  chromodomain-helicase-DNA-binding protein 9 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC007906, AC079416
    Related
    ENST00000219084.10
    Conserved Domains (4) summary
    smart00592
    Location:20342078
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:185245
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:266320
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    cl26465
    Location:304973
    SNF2_N; SNF2 family N-terminal domain
  6. NM_001382353.1NP_001369282.1  chromodomain-helicase-DNA-binding protein 9 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (7), as well as variant 1, encodes isoform 1.
    Source sequence(s)
    AC007906, AC079416
    Related
    ENSP00000381522.3, ENST00000398510.7
    Conserved Domains (6) summary
    smart00592
    Location:25562600
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:8111480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:176362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    COG5641
    Location:161558
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd18663
    Location:770828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
  7. NM_001382354.1NP_001369283.1  chromodomain-helicase-DNA-binding protein 9 isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC007906, AC079416
    Conserved Domains (5) summary
    smart00592
    Location:20502094
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:304973
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:263321
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:179243
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:353574
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
  8. NM_001382355.1NP_001369284.1  chromodomain-helicase-DNA-binding protein 9 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC007906, AC079416
    Conserved Domains (5) summary
    smart00592
    Location:20492093
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:304973
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:263321
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:179243
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:353574
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9
  9. NM_025134.7NP_079410.4  chromodomain-helicase-DNA-binding protein 9 isoform 2

    See identical proteins and their annotated locations for NP_079410.4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2), as well as variant 3, encodes isoform 2.
    Source sequence(s)
    AC007906, AC079416
    Consensus CDS
    CCDS45485.1
    UniProtKB/Swiss-Prot
    Q3L8U1
    Related
    ENSP00000457466.1, ENST00000566029.5
    Conserved Domains (6) summary
    smart00592
    Location:25402584
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain

RNA

  1. NR_168108.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  2. NR_168109.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  3. NR_168111.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  4. NR_168112.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  5. NR_168114.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  6. NR_168116.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  7. NR_168117.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  8. NR_168119.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  9. NR_168120.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906
  10. NR_168123.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC007906

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    53054982..53327502
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005256168.4XP_005256225.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_005256225.1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  2. XM_024450459.1XP_024306227.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  3. XM_017023719.1XP_016879208.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  4. XM_017023720.1XP_016879209.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  5. XM_005256169.2XP_005256226.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_005256226.1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  6. XM_011523347.2XP_011521649.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_011521649.1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  7. XM_017023724.1XP_016879213.1  chromodomain-helicase-DNA-binding protein 9 isoform X5

    Conserved Domains (6) summary
    smart00592
    Location:21062150
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:241301
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    cd00046
    Location:428577
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:412699
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:731845
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:323376
    Chromo; Chromo (CHRromatin Organization MOdifier) domain
  8. XM_017023725.1XP_016879214.1  chromodomain-helicase-DNA-binding protein 9 isoform X6

  9. XM_006721281.2XP_006721344.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006721344.1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  10. XM_006721283.3XP_006721346.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    See identical proteins and their annotated locations for XP_006721346.1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  11. XM_017023723.2XP_016879212.1  chromodomain-helicase-DNA-binding protein 9 isoform X4

    UniProtKB/Swiss-Prot
    Q3L8U1
    Conserved Domains (6) summary
    smart00592
    Location:25402584
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  12. XM_017023722.2XP_016879211.1  chromodomain-helicase-DNA-binding protein 9 isoform X3

    UniProtKB/Swiss-Prot
    Q3L8U1
    Conserved Domains (7) summary
    smart00592
    Location:25412585
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    cd00046
    Location:8791028
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00176
    Location:8631150
    SNF2_N; SNF2 family N-terminal domain
    pfam00271
    Location:11821296
    Helicase_C; Helicase conserved C-terminal domain
    pfam00385
    Location:774827
    Chromo; Chromo (CHRromatin Organization MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumour-associated antigen 1 homologue
  13. XM_017023718.2XP_016879207.1  chromodomain-helicase-DNA-binding protein 9 isoform X1

    Conserved Domains (6) summary
    smart00592
    Location:25572601
    BRK; domain in transcription and CHROMO domain helicases
    COG5048
    Location:80479
    COG5048; FOG: Zn-finger [General function prediction only]
    cd00024
    Location:692752
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:773827
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    pfam15350
    Location:164355
    ETAA1; Ewing's tumor-associated antigen 1 homolog
    cl26465
    Location:8111480
    SNF2_N; SNF2 family N-terminal domain
  14. XM_017023721.1XP_016879210.1  chromodomain-helicase-DNA-binding protein 9 isoform X2

    UniProtKB/Swiss-Prot
    Q3L8U1
    Conserved Domains (6) summary
    smart00592
    Location:25562600
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:8111480
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    COG5422
    Location:176362
    ROM1; RhoGEF, Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases [Signal transduction mechanisms]
    COG5641
    Location:161558
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd18663
    Location:770828
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:686750
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
  15. XM_024450461.1XP_024306229.1  chromodomain-helicase-DNA-binding protein 9 isoform X8

    Conserved Domains (4) summary
    smart00592
    Location:18961940
    BRK; domain in transcription and CHROMO domain helicases
    cd00024
    Location:3191
    CHROMO; Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence ...
    pfam00385
    Location:112166
    Chromo; Chromo (CHRromatin Organisation MOdifier) domain
    cl26465
    Location:150819
    SNF2_N; SNF2 family N-terminal domain
  16. XM_024450460.1XP_024306228.1  chromodomain-helicase-DNA-binding protein 9 isoform X7

    Conserved Domains (5) summary
    smart00592
    Location:20502094
    BRK; domain in transcription and CHROMO domain helicases
    PLN03142
    Location:304973
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
    cd18663
    Location:263321
    CD2_tandem_CHD5-9_like; repeat 2 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18668
    Location:179243
    CD1_tandem_CHD5-9_like; repeat 1 of the paired tandem chromodomains of chromodomain helicase DNA-binding protein 5-9, and similar proteins
    cd18061
    Location:353574
    DEXHc_CHD9; DEAH-box helicase domain of the chromodomain helicase DNA binding protein 9

RNA

  1. XR_001751995.2 RNA Sequence

    Related
    ENST00000615216.4
  2. XR_001751993.1 RNA Sequence

  3. XR_001751994.2 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_015287.1: Suppressed sequence

    Description
    NM_015287.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
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