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ZNF701 zinc finger protein 701 [ Homo sapiens (human) ]

Gene ID: 55762, updated on 2-Nov-2024

Summary

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Official Symbol
ZNF701provided by HGNC
Official Full Name
zinc finger protein 701provided by HGNC
Primary source
HGNC:HGNC:25597
See related
Ensembl:ENSG00000167562 AllianceGenome:HGNC:25597
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in thyroid (RPKM 1.6), placenta (RPKM 1.6) and 25 other tissues See more
Orthologs
all
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Genomic context

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See ZNF701 in Genome Data Viewer
Location:
19q13.41
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (52570287..52600149)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (55654861..55684595)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (53073540..53090427)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 578 Neighboring gene zinc finger protein 347 pseudogene Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:52986584-52987370 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr19:52987371-52988156 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:52990721-52991690 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:52996369-52997007 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:52997008-52997645 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53003665-53004504 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53029540-53030366 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53030367-53031194 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53039321-53039907 Neighboring gene zinc finger protein 808 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53061637-53062248 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53062249-53062862 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53072140-53072749 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15051 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53073969-53074577 Neighboring gene ribosomal protein L39 pseudogene 34 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:53091538-53091757 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10995 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53104606-53105112 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15054 Neighboring gene zinc finger protein 137, pseudogene Neighboring gene zinc finger protein 677-like Neighboring gene zinc finger protein 83 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53140536-53141054 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53141055-53141572 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10996 Neighboring gene Sharpr-MPRA regulatory region 1800 Neighboring gene Zinc finger protein LOC122539214 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:53167404-53167904 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53171845-53172346 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr19:53172853-53174052 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:53177263-53177762 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53179336-53179900 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr19:53179901-53180465 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53192883-53193418 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 10997

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Mediating effect of genome-wide DNA methylation on suicidal ideation induced by perceived stress. Dada O, et al. Psychiatr Genet, 2021 Oct 1. PMID 34050117
  2. CRL2(ZER1/ZYG11B) recognizes small N-terminal residues for degradation. Li Y, et al. Nat Commun, 2022 Dec 10. PMID 36496439, Free PMC Article
  3. Molecular basis for recognition of Gly/N-degrons by CRL2(ZYG11B) and CRL2(ZER1). Yan X, et al. Mol Cell, 2021 Aug 19. PMID 34214466
  4. Acetylation-Mimic Mutation of TRIM28-Lys304 to Gln Attenuates the Interaction with KRAB-Zinc-Finger Proteins and Affects Gene Expression in Leukemic K562 Cells. Chang YJ, et al. Int J Mol Sci, 2023 Jun 6. PMID 37372979, Free PMC Article
  5. Regulation of epidermal differentiation through KDF1-mediated deubiquitination of IKKα. Li Y, et al. EMBO Rep, 2020 May 6. PMID 32239614, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Mediating effect of genome-wide DNA methylation on suicidal ideation induced by perceived stress.
    Title: Mediating effect of genome-wide DNA methylation on suicidal ideation induced by perceived stress.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Genotypes

HIV-1 interactions

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Replication interactions

Interaction Pubs
Knockdown of zinc finger protein 701 (ZNF701) by shRNA library screening inhibits HIV-1 replication in cultured Jurkat T-cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ10891

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 701

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172655.1 → NP_001166126.1  zinc finger protein 701 isoform 1

    See identical proteins and their annotated locations for NP_001166126.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC022150, BC067346
    Consensus CDS
    CCDS54311.1
    UniProtKB/Swiss-Prot
    A2RRM8, B9EGF2, F5GZM6, Q66K42, Q9NV72
    Related
    ENSP00000444339.1, ENST00000540331.1
    Conserved Domains (5) summary
    smart00349
    Location:74 → 114
    KRAB; krueppel associated box
    COG5048
    Location:390 → 527
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:338 → 358
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:74 → 113
    KRAB; KRAB box
    pfam13465
    Location:406 → 431
    zf-H2C2_2; Zinc-finger double domain

  2. NM_001433681.1 → NP_001420610.1  zinc finger protein 701 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC022150

  3. NM_001433682.1 → NP_001420611.1  zinc finger protein 701 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC022150

  4. NM_001433683.1 → NP_001420612.1  zinc finger protein 701 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC022150

  5. NM_001433684.1 → NP_001420613.1  zinc finger protein 701 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC022150

  6. NM_001433685.1 → NP_001420614.1  zinc finger protein 701 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC022150

  7. NM_018260.3 → NP_060730.2  zinc finger protein 701 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) represents use of an alternate promoter and 5' UTR, lacks an alternate exon, and uses a downstream start codon, compared to variant 1. The resulting isoform (2) has a shorter N-terminus, compared to isoform 1.
    Source sequence(s)
    AC022150
    Consensus CDS
    CCDS33092.1
    UniProtKB/Swiss-Prot
    Q9NV72
    Related
    ENSP00000375662.2, ENST00000391785.8
    Conserved Domains (5) summary
    smart00349
    Location:8 → 48
    KRAB; krueppel associated box
    COG5048
    Location:324 → 461
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:272 → 292
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:8 → 47
    KRAB; KRAB box
    pfam13465
    Location:340 → 365
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    52570287..52600149
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047439071.1 → XP_047295027.1  zinc finger protein 701 isoform X1

    UniProtKB/Swiss-Prot
    A2RRM8, B9EGF2, F5GZM6, Q66K42, Q9NV72

  2. XM_047439072.1 → XP_047295028.1  zinc finger protein 701 isoform X1

    UniProtKB/Swiss-Prot
    A2RRM8, B9EGF2, F5GZM6, Q66K42, Q9NV72

  3. XM_047439074.1 → XP_047295030.1  zinc finger protein 701 isoform X1

    UniProtKB/Swiss-Prot
    A2RRM8, B9EGF2, F5GZM6, Q66K42, Q9NV72

  4. XM_047439073.1 → XP_047295029.1  zinc finger protein 701 isoform X1

    UniProtKB/Swiss-Prot
    A2RRM8, B9EGF2, F5GZM6, Q66K42, Q9NV72
    Related
    ENSP00000301093.2, ENST00000301093.6

  5. XM_047439075.1 → XP_047295031.1  zinc finger protein 701 isoform X2

  6. XM_047439077.1 → XP_047295033.1  zinc finger protein 701 isoform X2

  7. XM_047439076.1 → XP_047295032.1  zinc finger protein 701 isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    55654861..55684595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054321412.1 → XP_054177387.1  zinc finger protein 701 isoform X1

  2. XM_054321413.1 → XP_054177388.1  zinc finger protein 701 isoform X1

  3. XM_054321415.1 → XP_054177390.1  zinc finger protein 701 isoform X1

  4. XM_054321414.1 → XP_054177389.1  zinc finger protein 701 isoform X1

  5. XM_054321416.1 → XP_054177391.1  zinc finger protein 701 isoform X2

  6. XM_054321418.1 → XP_054177393.1  zinc finger protein 701 isoform X2

  7. XM_054321417.1 → XP_054177392.1  zinc finger protein 701 isoform X2

Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9NV72.3 GenPept UniProtKB/Swiss-Prot:Q9NV72

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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