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BIVM basic, immunoglobulin-like variable motif containing [ Homo sapiens (human) ]

Gene ID: 54841, updated on 1-Aug-2020

Summary

Official Symbol
BIVMprovided by HGNC
Official Full Name
basic, immunoglobulin-like variable motif containingprovided by HGNC
Primary source
HGNC:HGNC:16034
See related
Ensembl:ENSG00000134897
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in kidney (RPKM 9.2), heart (RPKM 8.2) and 25 other tissues See more
Orthologs

Genomic context

See BIVM in Genome Data Viewer
Location:
13q33.1
Exon count:
11
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (102799119..102841533)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (103451399..103493888)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370337 Neighboring gene testis expressed 30 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene BIVM-ERCC5 readthrough Neighboring gene RNY5 pseudogene 8 Neighboring gene ERCC excision repair 5, endonuclease Neighboring gene methyltransferase like 21E, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Readthrough BIVM-ERCC5

Readthrough gene: BIVM-ERCC5, Included gene: ERCC5

Homology

Clone Names

  • FLJ44301, FLJ44556, MGC133326

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
extracellular space HDA PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
basic immunoglobulin-like variable motif-containing protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001159596.2NP_001153068.1  basic immunoglobulin-like variable motif-containing protein isoform b

    See identical proteins and their annotated locations for NP_001153068.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has multiple differences compared to variant 1. These differences result in a distinct 5' UTR and cause translation initiation at a downstream start codon, compared to variant 1. The encoded protein (isoform b) is shorter than isoform a.
    Source sequence(s)
    AF411385, BC112339, GD145579
    Consensus CDS
    CCDS53879.1
    UniProtKB/Swiss-Prot
    Q86UB2
    Related
    ENSP00000412794.2, ENST00000448849.3
  2. NM_017693.4NP_060163.2  basic immunoglobulin-like variable motif-containing protein isoform a

    See identical proteins and their annotated locations for NP_060163.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (a).
    Source sequence(s)
    AF411385, GD145579
    Consensus CDS
    CCDS9505.1
    UniProtKB/Swiss-Prot
    Q86UB2
    Related
    ENSP00000257336.1, ENST00000257336.6

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    102799119..102841533
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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