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BIVM-ERCC5 BIVM-ERCC5 readthrough [ Homo sapiens (human) ]

Gene ID: 100533467, updated on 5-Jan-2022

Summary

Official Symbol
BIVM-ERCC5provided by HGNC
Official Full Name
BIVM-ERCC5 readthroughprovided by HGNC
Primary source
HGNC:HGNC:43690
See related
Ensembl:ENSG00000270181
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ERCC5-202
Summary
This locus represents naturally occurring read-through transcription between the neighboring BIVM (basic, immunoglobulin-like variable motif containing) and ERCC5 (excision repair cross-complementing rodent repair deficiency, complementation group 5) genes on chromosome 13. The read-through transcript encodes a fusion protein that shares sequence identity with the products of each individual gene. [provided by RefSeq, Feb 2011]
Expression
Ubiquitous expression in duodenum (RPKM 14.2), spleen (RPKM 14.0) and 25 other tissues See more
Orthologs
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Genomic context

See BIVM-ERCC5 in Genome Data Viewer
Location:
13q33.1
Exon count:
23
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (102807146..102875995)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (103459496..103528345)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105370337 Neighboring gene testis expressed 30 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene basic, immunoglobulin-like variable motif containing Neighboring gene RNY5 pseudogene 8 Neighboring gene ERCC excision repair 5, endonuclease Neighboring gene methyltransferase like 21E, pseudogene Neighboring gene solute carrier family 10 member 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Readthrough BIVM-ERCC5

Included genes: ERCC5, BIVM

Homology

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001204425.2NP_001191354.2  BIVM-ERCC5 protein

    Status: REVIEWED

    Source sequence(s)
    AL157769, LM994822
    Related
    ENSP00000491742.1, ENST00000639435.1
    Conserved Domains (1) summary
    TIGR00600
    Location:4841483
    rad2; DNA excision repair protein (rad2)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    102807146..102875995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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