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USO1 USO1 vesicle transport factor [ Canis lupus familiaris (dog) ]

Gene ID: 478430, updated on 17-Aug-2024

Summary

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Official Symbol
USO1provided by VGNC
Official Full Name
USO1 vesicle transport factorprovided by VGNC
Primary source
VGNC:VGNC:48176
See related
Ensembl:ENSCAFG00845028789
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 32
Exon count:
25
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 32 NC_051836.1 (330513..419681)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 32 NC_006614.4 (41486671..41575746, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 32 NC_049253.1 (39797734..39887494, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 32 NC_049292.1 (326480..415549)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 32 NC_049773.1 (283134..372220)

Chromosome 32 - NC_051836.1Genomic Context describing neighboring genes Neighboring gene G3BP stress granule assembly factor 2 Neighboring gene putative uncharacterized protein ENSP00000383309 Neighboring gene uncharacterized LOC119867168 Neighboring gene uncharacterized LOC100688595 Neighboring gene uncharacterized LOC111093573 Neighboring gene uncharacterized LOC111093574

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in transcytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle fusion with Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in ER to Golgi transport vesicle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi stack IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
general vesicular transport factor p115
Names
USO1 homolog, vesicle docking protein
USO1 vesicle docking protein homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051836.1 Reference ROS_Cfam_1.0

    Range
    330513..419681
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038443835.1 → XP_038299763.1  general vesicular transport factor p115 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RKH7, A0A8C0Z548, A0A8P0TDN4
    Related
    ENSCAFP00845039988.1, ENSCAFT00845051009.1
    Conserved Domains (3) summary
    TIGR02168
    Location:666 → 904
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 635
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  2. XM_038443836.1 → XP_038299764.1  general vesicular transport factor p115 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KH03, A0A8C0NIV1, A0A8P0TMB8
    Related
    ENSCAFP00845039956.1, ENSCAFT00845050967.1
    Conserved Domains (3) summary
    TIGR02168
    Location:659 → 897
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 628
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  3. XM_038443837.1 → XP_038299765.1  general vesicular transport factor p115 isoform X3

    UniProtKB/TrEMBL
    A0A8C0TII9, A0A8I3Q241
    Related
    ENSCAFP00845040127.1, ENSCAFT00845051169.1
    Conserved Domains (3) summary
    TIGR02168
    Location:604 → 842
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:285 → 573
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:208 → 267
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049292.1 Alternate UMICH_Zoey_3.1

    Range
    326480..415549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038518260.1 → XP_038374188.1  general vesicular transport factor p115 isoform X1

    Conserved Domains (3) summary
    TIGR02168
    Location:666 → 904
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 635
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  2. XM_038518261.1 → XP_038374189.1  general vesicular transport factor p115 isoform X2

    Conserved Domains (3) summary
    TIGR02168
    Location:659 → 897
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 628
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  3. XM_038518262.1 → XP_038374190.1  general vesicular transport factor p115 isoform X3

    Conserved Domains (3) summary
    TIGR02168
    Location:604 → 842
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:285 → 573
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:208 → 267
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049773.1 Alternate UNSW_CanFamBas_1.0

    Range
    283134..372220
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038646181.1 → XP_038502109.1  general vesicular transport factor p115 isoform X1

    Conserved Domains (3) summary
    TIGR02168
    Location:666 → 904
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 635
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  2. XM_038646182.1 → XP_038502110.1  general vesicular transport factor p115 isoform X2

    Conserved Domains (3) summary
    TIGR02168
    Location:659 → 897
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 628
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  3. XM_038646183.1 → XP_038502111.1  general vesicular transport factor p115 isoform X3

    Conserved Domains (3) summary
    TIGR02168
    Location:604 → 842
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:285 → 573
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:208 → 267
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049253.1 Alternate UU_Cfam_GSD_1.0

    Range
    39797734..39887494 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038582426.1 → XP_038438354.1  general vesicular transport factor p115 isoform X3

    UniProtKB/TrEMBL
    A0A8C0TII9, A0A8I3Q241
    Conserved Domains (3) summary
    TIGR02168
    Location:604 → 842
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:285 → 573
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:208 → 267
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  2. XM_038582424.1 → XP_038438352.1  general vesicular transport factor p115 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RKH7, A0A8C0Z548, A0A8P0TDN4
    Conserved Domains (3) summary
    TIGR02168
    Location:666 → 904
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 635
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  3. XM_038582425.1 → XP_038438353.1  general vesicular transport factor p115 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KH03, A0A8C0NIV1, A0A8P0TMB8
    Conserved Domains (3) summary
    TIGR02168
    Location:659 → 897
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 628
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006614.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    41486671..41575746 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005639064.4 → XP_005639121.2  general vesicular transport factor p115 isoform X1

    UniProtKB/TrEMBL
    A0A8C0RKH7, A0A8C0Z548, A0A8P0TDN4
    Conserved Domains (3) summary
    TIGR02168
    Location:666 → 904
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 635
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  2. XM_535607.7 → XP_535607.3  general vesicular transport factor p115 isoform X2

    UniProtKB/TrEMBL
    A0A8C0KH03, A0A8C0NIV1, A0A8P0TMB8
    Conserved Domains (3) summary
    TIGR02168
    Location:659 → 897
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:347 → 628
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:270 → 329
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor

  3. XM_014109923.3 → XP_013965398.2  general vesicular transport factor p115 isoform X3

    UniProtKB/TrEMBL
    A0A8C0TII9, A0A8I3Q241
    Conserved Domains (3) summary
    TIGR02168
    Location:604 → 842
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam04869
    Location:285 → 573
    Uso1_p115_head; Uso1 / p115 like vesicle tethering protein, head region
    pfam18770
    Location:208 → 267
    Arm_vescicular; Armadillo tether-repeat of vescicular transport factor
Nucleotide Protein
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