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ACSL5 acyl-CoA synthetase long chain family member 5 [ Canis lupus familiaris (dog) ]

Gene ID: 477820, updated on 17-Aug-2024

Summary

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Official Symbol
ACSL5provided by VGNC
Official Full Name
acyl-CoA synthetase long chain family member 5provided by VGNC
Primary source
VGNC:VGNC:37535
See related
Ensembl:ENSCAFG00845029720
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 28
Exon count:
25
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (23970117..24011237)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (23589635..23630543)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (23737237..23775914)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (23527397..23568302)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (23538540..23579462)

Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene guanylate cyclase 2G-like Neighboring gene tectorin beta Neighboring gene zinc finger DHHC-type palmitoyltransferase 6 Neighboring gene vesicle transport through interaction with t-SNAREs 1A Neighboring gene lysine-rich nucleolar protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A large deletion on CFA28 omitting ACSL5 gene is associated with intestinal lipid malabsorption in the Australian Kelpie dog breed. O'Brien MJ, et al. Sci Rep, 2020 Oct 26. PMID 33106515, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A large deletion on CFA28 omitting ACSL5 gene is associated with intestinal lipid malabsorption in the Australian Kelpie dog breed.
    Title: A large deletion on CFA28 omitting ACSL5 gene is associated with intestinal lipid malabsorption in the Australian Kelpie dog breed.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
long-chain-fatty-acid--CoA ligase 5; LOW QUALITY PROTEIN: long-chain-fatty-acid--CoA ligase 5
XP_005637786.1
XP_005637787.1
XP_005637788.1
XP_022267502.1
XP_038296487.1
XP_038296488.1
XP_038296489.1
XP_038296490.1
XP_038371113.1
XP_038371114.1
XP_038371115.1
XP_038371116.1
XP_038434721.1
XP_038498899.1
XP_038498900.1
XP_038498901.1
XP_038498902.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051832.1 Reference ROS_Cfam_1.0

    Range
    23970117..24011237
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038440560.1 → XP_038296488.1  long-chain-fatty-acid--CoA ligase 5

    UniProtKB/TrEMBL
    A0A8C0KD58, A0A8C0NSC4, A0A8I3Q1U2, A0A8P0NA06
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  2. XM_038440559.1 → XP_038296487.1  long-chain-fatty-acid--CoA ligase 5

    UniProtKB/TrEMBL
    A0A8C0KD58, A0A8C0NSC4, A0A8I3Q1U2, A0A8P0NA06
    Related
    ENSCAFP00845041361.1, ENSCAFT00845052694.1
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  3. XM_038440562.1 → XP_038296490.1  long-chain-fatty-acid--CoA ligase 5

    UniProtKB/TrEMBL
    A0A8C0KD58, A0A8C0NSC4, A0A8I3Q1U2, A0A8P0NA06
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  4. XM_038440561.1 → XP_038296489.1  long-chain-fatty-acid--CoA ligase 5

    UniProtKB/TrEMBL
    A0A8C0KD58, A0A8C0NSC4, A0A8I3Q1U2, A0A8P0NA06
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049288.1 Alternate UMICH_Zoey_3.1

    Range
    23527397..23568302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038515186.1 → XP_038371114.1  long-chain-fatty-acid--CoA ligase 5

    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  2. XM_038515185.1 → XP_038371113.1  long-chain-fatty-acid--CoA ligase 5

    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  3. XM_038515188.1 → XP_038371116.1  long-chain-fatty-acid--CoA ligase 5

    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  4. XM_038515187.1 → XP_038371115.1  long-chain-fatty-acid--CoA ligase 5

    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

    Range
    23538540..23579462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038642972.1 → XP_038498900.1  long-chain-fatty-acid--CoA ligase 5

    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  2. XM_038642971.1 → XP_038498899.1  long-chain-fatty-acid--CoA ligase 5

    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  3. XM_038642974.1 → XP_038498902.1  long-chain-fatty-acid--CoA ligase 5

    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  4. XM_038642973.1 → XP_038498901.1  long-chain-fatty-acid--CoA ligase 5

    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

    Range
    23737237..23775914
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038578793.1 → XP_038434721.1  LOW QUALITY PROTEIN: long-chain-fatty-acid--CoA ligase 5

    UniProtKB/TrEMBL
    A0A8I3Q1U2, A0A8P0NA06

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    23589635..23630543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005637730.4 → XP_005637787.1  long-chain-fatty-acid--CoA ligase 5

    See identical proteins and their annotated locations for XP_005637787.1

    UniProtKB/TrEMBL
    A0A8C0KD58, A0A8C0NSC4, A0A8I3Q1U2, A0A8P0NA06
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  2. XM_005637731.4 → XP_005637788.1  long-chain-fatty-acid--CoA ligase 5

    See identical proteins and their annotated locations for XP_005637788.1

    UniProtKB/TrEMBL
    A0A8C0KD58, A0A8C0NSC4, A0A8I3Q1U2, A0A8P0NA06
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  3. XM_022411794.2 → XP_022267502.1  long-chain-fatty-acid--CoA ligase 5

    UniProtKB/TrEMBL
    A0A8C0KD58, A0A8C0NSC4, A0A8I3Q1U2, A0A8P0NA06
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

  4. XM_005637729.4 → XP_005637786.1  long-chain-fatty-acid--CoA ligase 5

    See identical proteins and their annotated locations for XP_005637786.1

    UniProtKB/TrEMBL
    A0A8C0KD58, A0A8C0NSC4, A0A8I3Q1U2, A0A8P0NA06
    Conserved Domains (1) summary
    cd05927
    Location:101 → 678
    LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
Nucleotide Protein
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