TRANK1 tetratricopeptide repeat and ankyrin repeat containing 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: TRANK1provided by VGNC
Official Full Name: tetratricopeptide repeat and ankyrin repeat containing 1provided by VGNC
Primary source: VGNC:VGNC:47775
See related: Ensembl:ENSCAFG00845026194
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 23

Exon count:: 23

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	23	NC_051827.1 (7034999..7115474, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	23	NC_006605.4 (6789473..6869908, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	23	NC_049244.1 (6987132..7067610, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	23	NC_049283.1 (6854618..6935467, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	23	NC_049764.1 (6997235..7077671, complement)

Chromosome 23 - NC_051827.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D11S1978 (e-PCR)
- UniSTS:27766

Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: TPR and ankyrin repeat-containing protein 1; LOW QUALITY PROTEIN: TPR and ankyrin repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051827.1 Reference ROS_Cfam_1.0

Range

7034999..7115474 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038431817.1 → XP_038287745.1 TPR and ankyrin repeat-containing protein 1 isoform X2

UniProtKB/TrEMBL

A0A8C0MA15

Conserved Domains (6) summary

PTZ00322
Location:271 → 341

PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

PHA03095
Location:216 → 533

PHA03095; ankyrin-like protein; Provisional

TIGR00990
Location:5 → 112

3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

sd00006
Location:7 → 35

TPR; TPR repeat [structural motif]

sd00045
Location:447 → 479

ANK; ANK repeat [structural motif]

cl38915
Location:1513 → 1653

DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases
XM_038431816.1 → XP_038287744.1 TPR and ankyrin repeat-containing protein 1 isoform X1

UniProtKB/TrEMBL

A0A8C0JJN8

Related

ENSCAFP00845036633.1, ENSCAFT00845046674.1

Conserved Domains (5) summary

PTZ00322
Location:271 → 341

PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

TIGR00990
Location:5 → 112

3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

sd00006
Location:7 → 35

TPR; TPR repeat [structural motif]

sd00045
Location:501 → 533

ANK; ANK repeat [structural motif]

cl38915
Location:1567 → 1707

DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases

Alternate UMICH_Zoey_3.1

Genomic

NC_049283.1 Alternate UMICH_Zoey_3.1

Range

6854618..6935467 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038507138.1 → XP_038363066.1 LOW QUALITY PROTEIN: TPR and ankyrin repeat-containing protein 1 isoform X1

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049764.1 Alternate UNSW_CanFamBas_1.0

Range

6997235..7077671 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038634558.1 → XP_038490486.1 TPR and ankyrin repeat-containing protein 1 isoform X1

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049244.1 Alternate UU_Cfam_GSD_1.0

Range

6987132..7067610 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038570369.1 → XP_038426297.1 TPR and ankyrin repeat-containing protein 1 isoform X1

UniProtKB/TrEMBL

A0A8C0JJN8

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006605.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

6789473..6869908 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005634226.4 → XP_005634283.2 LOW QUALITY PROTEIN: TPR and ankyrin repeat-containing protein 1 isoform X1

UniProtKB/TrEMBL

A0A8C0JJN8

Conserved Domains (5) summary

PTZ00322
Location:271 → 341

PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

TIGR00990
Location:5 → 112

3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

sd00006
Location:7 → 35

TPR; TPR repeat [structural motif]

sd00045
Location:501 → 533

ANK; ANK repeat [structural motif]

cl38915
Location:1567 → 1707

DEAD-like_helicase_C; C-terminal helicase domain of the DEAD-like helicases