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CKAP5 cytoskeleton associated protein 5 [ Pan troglodytes (chimpanzee) ]

Gene ID: 451160, updated on 17-Aug-2024

Summary

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Official Symbol
CKAP5provided by VGNC
Official Full Name
cytoskeleton associated protein 5provided by VGNC
Primary source
VGNC:VGNC:3151
Locus tag
CK820_G0028912
See related
Ensembl:ENSPTRG00000003553
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
human mouse all
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Genomic context

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See CKAP5 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
46
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 9 NC_072407.2 (50761530..50864077, complement)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 11 NC_072409.1 (50565351..50667885, complement)

Chromosome 9 - NC_072407.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 408 Neighboring gene small nucleolar RNA SNORD67 Neighboring gene small nucleolar RNA SNORD67 Neighboring gene coagulation factor II, thrombin Neighboring gene uncharacterized LOC134807252 Neighboring gene LDL receptor related protein 4 Neighboring gene centriolar satellite-associated tubulin polyglutamylase complex regulator 1 Neighboring gene ATPase Get3-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule plus end polymerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in centrosome duplication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in establishment or maintenance of microtubule cytoskeleton polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in microtubule polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitotic spindle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in centrosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in kinetochore IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in spindle pole IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cytoskeleton-associated protein 5
Names
colonic and hepatic tumor over-expressed protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072407.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    50761530..50864077 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_001165890.7 → XP_001165890.1  cytoskeleton-associated protein 5 isoform X2

    See identical proteins and their annotated locations for XP_001165890.1

    UniProtKB/TrEMBL
    A0A2I3TL88, A0A2J8LHA2, A0A6D2XNK7, H2R5G4
    Related
    ENSPTRP00000048121.1
    Conserved Domains (1) summary
    pfam12348
    Location:856 → 1048
    CLASP_N; CLASP N terminal

  2. XM_009460332.3 → XP_009458607.1  cytoskeleton-associated protein 5 isoform X1

    See identical proteins and their annotated locations for XP_009458607.1

    UniProtKB/TrEMBL
    A0A2I3TL88
    Conserved Domains (1) summary
    pfam12348
    Location:856 → 1048
    CLASP_N; CLASP N terminal

  3. XM_024347088.3 → XP_024202856.1  cytoskeleton-associated protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A2I3TL88, A0A2J8LHA2, A0A6D2XNK7, H2R5G4

  4. XM_054661289.2 → XP_054517264.1  cytoskeleton-associated protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A2I3TL88

  5. XM_054661290.2 → XP_054517265.1  cytoskeleton-associated protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A2I3TL88, A0A2J8LHA2, A0A6D2XNK7, H2R5G4

  6. XM_009460333.5 → XP_009458608.1  cytoskeleton-associated protein 5 isoform X1

    See identical proteins and their annotated locations for XP_009458608.1

    UniProtKB/TrEMBL
    A0A2I3TL88
    Related
    ENSPTRP00000072906.1
    Conserved Domains (1) summary
    pfam12348
    Location:856 → 1048
    CLASP_N; CLASP N terminal
Nucleotide Protein
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