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XB5904899.L uncharacterized XB5904899 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 397848, updated on 17-Aug-2024

Summary

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Symbol
XB5904899.L
Full Name
uncharacterized XB5904899 L homeolog
Primary source
Xenbase:XB-GENE-5904911
Locus tag
XELAEV_18030360mg
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
prdm9; XFDL141; prdm9.L
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Genomic context

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Location:
chromosome: 6L
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 6L NC_054381.1 (2301082..2338575)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 6L NC_030734.1 (270373..307677)

Chromosome 6L - NC_054381.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 239-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene oocyte zinc finger protein XlCOF15-like Neighboring gene gastrula zinc finger protein XlCGF57.1-like Neighboring gene uncharacterized LOC100301958 Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene zinc finger protein 585B L homeolog Neighboring gene uncharacterized LOC121394795

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
PR domain containing 9 L homeolog
Names
XFDL 141
zinc finger protein XFDL 141
NP_001081458.1
XP_041421241.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087989.1 → NP_001081458.1  PR domain containing 9 L homeolog

    See identical proteins and their annotated locations for NP_001081458.1

    Status: PROVISIONAL

    Source sequence(s)
    U65897
    UniProtKB/TrEMBL
    P70043
    Conserved Domains (4) summary
    COG5048
    Location:215 → 395
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:321 → 341
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:249 → 272
    zf-H2C2_2; Zinc-finger double domain
    cl19727
    Location:82 → 133
    DUF1451; Zinc-ribbon containing domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054381.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    2301082..2338575
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041565307.1 → XP_041421241.1  PR domain containing 9 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8FUC6, A0A974CM66
    Conserved Domains (2) summary
    COG5048
    Location:55 → 401
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:323 → 343
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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