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Source database (GenBank or RefSeq) File type

Xenopus_laevis_v2

Organism name:

Xenopus laevis (African clawed frog)

Infraspecific name:

Strain: J

Sex:

female

BioSample:

SAMN04518361

BioProject:

PRJNA313213

Submitter:

International Xenopus Sequencing Consortium

Date:

2016/08/09

Synonyms:

xenLae2

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_001663975.1 (latest)

RefSeq assembly accession:

GCF_001663975.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

LYTH01

Assembly method:

Meraculous v. May-2013

Genome coverage:

30x

Sequencing technology:

Illumina HiSeq 2000

IDs: 779791 [UID] 3378498 [GenBank] 3380878 [RefSeq]

See Genome Information for Xenopus laevis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_001663975.1	≠	GCF_001663975.1	Xenopus_laevis_v2	Chromosome	Latest GenBank, RefSeq suppressed

Comment

Global statistics

Total sequence length	2,718,416,252
Total ungapped length	2,408,707,234
Gaps between scaffolds	0
Number of scaffolds	108,032
Scaffold N50	136,570,856
Scaffold L50	9
Number of contigs	324,060
Contig N50	19,713
Contig L50	36,507
Total number of chromosomes and plasmids	18
Number of component sequences (WGS or clone)	324,060

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1L	CM004466.1	=	NC_030724.1	0
Chromosome 1S	CM004467.1	=	NC_030725.1	0
Chromosome 2L	CM004468.1	=	NC_030726.1	0
Chromosome 2S	CM004469.1	=	NC_030727.1	0
Chromosome 3L	CM004470.1	=	NC_030728.1	0
Chromosome 3S	CM004471.1	=	NC_030729.1	0
Chromosome 4L	CM004472.1	=	NC_030730.1	0
Chromosome 4S	CM004473.1	=	NC_030731.1	0
Chromosome 5L	CM004474.1	=	NC_030732.1	0
Chromosome 5S	CM004475.1	=	NC_030733.1	0
Chromosome 6L	CM004476.1	=	NC_030734.1	0
Chromosome 6S	CM004477.1	=	NC_030735.1	0
Chromosome 7L	CM004478.1	=	NC_030736.1	0
Chromosome 7S	CM004479.1	=	NC_030737.1	0
Chromosome 8L	CM004480.1	=	NC_030738.1	0
Chromosome 8S	CM004481.1	=	NC_030739.1	0
Chromosome 9_10L	CM004482.1	=	NC_030740.1	0
Chromosome 9_10S	CM004483.1	=	NC_030741.1	0
unplaced	n/a	n/a	n/a	108,014

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,718,416,252	108,032	2,408,707,234	136,570,856	216,028
Chromosome 1L	219,802,468	1	196,756,408	219,802,468	16,104
Chromosome 1S	179,946,965	1	159,667,175	179,946,965	13,288
Chromosome 2L	181,146,889	1	160,767,560	181,146,889	14,506
Chromosome 2S	159,726,490	1	141,916,988	159,726,490	11,650
Chromosome 3L	144,167,370	1	128,843,420	144,167,370	10,967
Chromosome 3S	120,483,113	1	107,277,385	120,483,113	8,905
Chromosome 4L	144,084,680	1	129,516,523	144,084,680	10,848
Chromosome 4S	121,245,977	1	108,533,205	121,245,977	8,756
Chromosome 5L	159,361,991	1	141,481,405	159,361,991	13,276
Chromosome 5S	136,570,856	1	120,151,392	136,570,856	10,228
Chromosome 6L	155,008,753	1	138,137,170	155,008,753	11,769
Chromosome 6S	128,359,586	1	113,327,136	128,359,586	10,009
Chromosome 7L	126,821,045	1	112,470,531	126,821,045	10,057
Chromosome 7S	89,646,544	1	78,986,018	89,646,544	7,446
Chromosome 8L	120,101,378	1	107,068,295	120,101,378	9,413
Chromosome 8S	98,932,710	1	85,823,433	98,932,710	8,491
Chromosome 9_10L	117,834,370	1	106,615,028	117,834,370	9,043
Chromosome 9_10S	104,563,341	1	94,275,475	104,563,341	7,921
unplaced	210,611,726	108,014	177,092,687	1,160,378	23,351

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Xenopus_laevis_v2

See Genome Information for Xenopus laevis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

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