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Zfp629 zinc finger protein 629 [ Mus musculus (house mouse) ]

Gene ID: 320683, updated on 5-Jan-2023

Summary

Official Symbol
Zfp629provided by MGI
Official Full Name
zinc finger protein 629provided by MGI
Primary source
MGI:MGI:2444524
See related
Ensembl:ENSMUSG00000045639 AllianceGenome:MGI:2444524
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Znf629; 9330199A09Rik
Summary
Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in genitourinary system; limb mesenchyme; nervous system; and retina layer. Orthologous to human ZNF629 (zinc finger protein 629). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 8.7), whole brain E14.5 (RPKM 7.8) and 28 other tissues See more
Orthologs
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Genomic context

See Zfp629 in Genome Data Viewer
Location:
7; 7 F3
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (127206200..127214958, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (127607028..127615785, complement)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene ring finger protein 40 Neighboring gene RIKEN cDNA 1700120K04 gene Neighboring gene predicted gene, 51458 Neighboring gene predicted gene, 53373

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362196.2NP_001349125.1  zinc finger protein 629 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC122417
    Consensus CDS
    CCDS21873.1
    UniProtKB/Swiss-Prot
    Q8BIR0
    Related
    ENSMUSP00000081612.4, ENSMUST00000084564.10
    Conserved Domains (3) summary
    COG5048
    Location:203511
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:179199
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:149171
    zf-C2H2; Zinc finger, C2H2 type
  2. NM_001362197.2NP_001349126.1  zinc finger protein 629 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC122417
    Consensus CDS
    CCDS21873.1
    UniProtKB/Swiss-Prot
    Q8BIR0
    Related
    ENSMUSP00000113903.2, ENSMUST00000122066.8
    Conserved Domains (3) summary
    COG5048
    Location:203511
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:179199
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:149171
    zf-C2H2; Zinc finger, C2H2 type
  3. NM_001404400.1NP_001391329.1  zinc finger protein 629 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC122417
    UniProtKB/Swiss-Prot
    Q8BIR0
  4. NM_001404402.1NP_001391331.1  zinc finger protein 629 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC122417
    UniProtKB/Swiss-Prot
    Q8BIR0
  5. NM_001404403.1NP_001391332.1  zinc finger protein 629 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC122417
    UniProtKB/Swiss-Prot
    Q8BIR0
  6. NM_001404404.1NP_001391333.1  zinc finger protein 629 isoform a

    Status: VALIDATED

    Source sequence(s)
    AC122417
    UniProtKB/Swiss-Prot
    Q8BIR0
  7. NM_001404405.1NP_001391334.1  zinc finger protein 629 isoform b

    Status: VALIDATED

    Source sequence(s)
    AC122417
  8. NM_177226.7NP_796200.1  zinc finger protein 629 isoform a

    See identical proteins and their annotated locations for NP_796200.1

    Status: VALIDATED

    Source sequence(s)
    AC122417
    Consensus CDS
    CCDS21873.1
    UniProtKB/Swiss-Prot
    Q6A085, Q8BIR0
    Related
    ENSMUSP00000053760.6, ENSMUST00000058038.12
    Conserved Domains (3) summary
    COG5048
    Location:203511
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:179199
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:149171
    zf-C2H2; Zinc finger, C2H2 type

RNA

  1. NR_155450.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122417
  2. NR_155451.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122417
  3. NR_155452.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122417
  4. NR_175840.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC122417

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    127206200..127214958 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011241833.4XP_011240135.1  zinc finger protein 629 isoform X2

    See identical proteins and their annotated locations for XP_011240135.1

    UniProtKB/Swiss-Prot
    Q6A085, Q8BIR0
    Conserved Domains (3) summary
    COG5048
    Location:203511
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:179199
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:149171
    zf-C2H2; Zinc finger, C2H2 type
  2. XM_006507952.4XP_006508015.1  zinc finger protein 629 isoform X1

    Conserved Domains (3) summary
    PHA03169
    Location:118269
    PHA03169; hypothetical protein; Provisional
    COG5048
    Location:251629
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:288308
    ZF_C2H2; C2H2 Zn finger [structural motif]