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Zfp652 zinc finger protein 652 [ Mus musculus (house mouse) ]

Gene ID: 268469, updated on 12-Aug-2019

Summary

Official Symbol
Zfp652provided by MGI
Official Full Name
zinc finger protein 652provided by MGI
Primary source
MGI:MGI:2442221
See related
Ensembl:ENSMUSG00000075595
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ZNF652; 9530033F24Rik
Expression
Ubiquitous expression in lung adult (RPKM 16.4), ovary adult (RPKM 12.3) and 28 other tissues See more
Orthologs

Genomic context

See Zfp652 in Genome Data Viewer
Location:
11; 11 D
Exon count:
5
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (95749067..95764715)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (95610381..95626029)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 652, opposite strand Neighboring gene RIKEN cDNA B130006D01 gene Neighboring gene polymerase (RNA) II (DNA directed) polypeptide K, pseudogene Neighboring gene predicted gene, 38957 Neighboring gene predicted gene, 29933

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Homology

Clone Names

  • MGC67134

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201609.2NP_963903.2  zinc finger protein 652

    See identical proteins and their annotated locations for NP_963903.2

    Status: VALIDATED

    Source sequence(s)
    AK220361, BC055752, BX636622, CF174682
    Consensus CDS
    CCDS36287.1
    UniProtKB/Swiss-Prot
    Q5DU09
    Related
    ENSMUSP00000089153.4, ENSMUST00000091565.4
    Conserved Domains (3) summary
    COG5048
    Location:438487
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:386406
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:454477
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p6 C57BL/6J

    Range
    95749067..95764715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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