Format

Send to:

Choose Destination

Zscan2 zinc finger and SCAN domain containing 2 [ Mus musculus (house mouse) ]

Gene ID: 22691, updated on 31-Jan-2019

Summary

Official Symbol
Zscan2provided by MGI
Official Full Name
zinc finger and SCAN domain containing 2provided by MGI
Primary source
MGI:MGI:99176
See related
Ensembl:ENSMUSG00000038797
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Zfp29; Zfp-29
Expression
Broad expression in testis adult (RPKM 7.0), CNS E14 (RPKM 4.3) and 23 other tissues See more
Orthologs

Genomic context

See Zscan2 in Genome Data Viewer
Location:
7 D3; 7 45.71 cM
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 7 NC_000073.6 (80860737..80878675)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 7 NC_000073.5 (88006994..88021400)

Chromosome 7 - NC_000073.6Genomic Context describing neighboring genes Neighboring gene CREB regulated transcription coactivator 3 Neighboring gene predicted gene 15880 Neighboring gene IQ motif containing GTPase activating protein 1 Neighboring gene predicted gene, 18392 Neighboring gene predicted gene, 32112 Neighboring gene WD repeat domain 73 Neighboring gene neuromedin B

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
DNA-binding transcription factor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 
sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
multicellular organism development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
positive regulation of transcription, DNA-templated IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
spermatogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
colocalizes_with nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
colocalizes_with nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
zinc finger and SCAN domain-containing protein 2
Names
zinc finger protein 29

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009553.2NP_033579.1  zinc finger and SCAN domain-containing protein 2

    See identical proteins and their annotated locations for NP_033579.1

    Status: PROVISIONAL

    Source sequence(s)
    BC046961
    Consensus CDS
    CCDS21399.1
    UniProtKB/Swiss-Prot
    Q07230
    Related
    ENSMUSP00000042321.7, ENSMUST00000044115.8
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000073.6 Reference GRCm38.p4 C57BL/6J

    Range
    80860737..80878675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006540811.3XP_006540874.1  zinc finger and SCAN domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006540874.1

    UniProtKB/Swiss-Prot
    Q07230
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain
  2. XM_006540809.3XP_006540872.1  zinc finger and SCAN domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006540872.1

    UniProtKB/Swiss-Prot
    Q07230
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain
  3. XM_006540806.3XP_006540869.1  zinc finger and SCAN domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006540869.1

    UniProtKB/Swiss-Prot
    Q07230
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain
  4. XM_006540807.3XP_006540870.1  zinc finger and SCAN domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006540870.1

    UniProtKB/Swiss-Prot
    Q07230
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain
  5. XM_006540805.3XP_006540868.1  zinc finger and SCAN domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006540868.1

    UniProtKB/Swiss-Prot
    Q07230
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain
  6. XM_006540808.3XP_006540871.1  zinc finger and SCAN domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006540871.1

    UniProtKB/Swiss-Prot
    Q07230
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain
  7. XM_006540812.3XP_006540875.1  zinc finger and SCAN domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006540875.1

    UniProtKB/Swiss-Prot
    Q07230
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain
  8. XM_006540810.3XP_006540873.1  zinc finger and SCAN domain-containing protein 2 isoform X1

    See identical proteins and their annotated locations for XP_006540873.1

    UniProtKB/Swiss-Prot
    Q07230
    Conserved Domains (5) summary
    COG5048
    Location:220600
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:364384
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:222244
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:69132
    SCAN; SCAN domain
    pfam13465
    Location:376401
    zf-H2C2_2; Zinc-finger double domain
Support Center