Format

Send to:

Choose Destination

ZNF555 zinc finger protein 555 [ Homo sapiens (human) ]

Gene ID: 148254, updated on 11-Jun-2021

Summary

Official Symbol
ZNF555provided by HGNC
Official Full Name
zinc finger protein 555provided by HGNC
Primary source
HGNC:HGNC:28382
See related
Ensembl:ENSG00000186300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in testis (RPKM 1.7), ovary (RPKM 1.1) and 25 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See ZNF555 in Genome Data Viewer
Location:
19p13.3
Exon count:
5
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (2841475..2860484)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (2841473..2860469)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene thimet oligopeptidase 1 Neighboring gene zinc finger protein 554 Neighboring gene 60S ribosomal protein L35a-like Neighboring gene zinc finger protein 556 Neighboring gene zinc finger protein 57 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ41894, MGC26707

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001172775.2NP_001166246.1  zinc finger protein 555 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate in-frame splice site, compared to variant 1. The resulting isoform (2) lacks one internal amino acid, compared to isoform 1.
    Source sequence(s)
    AC006130
    Consensus CDS
    CCDS59329.1
    UniProtKB/Swiss-Prot
    Q8NEP9
    Related
    ENSP00000467893.1, ENST00000591539.1
    Conserved Domains (5) summary
    smart00349
    Location:448
    KRAB; krueppel associated box
    COG5048
    Location:197594
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:509529
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:443
    KRAB; KRAB box
    pfam13465
    Location:437461
    zf-H2C2_2; Zinc-finger double domain
  2. NM_152791.5NP_690004.4  zinc finger protein 555 isoform 1

    See identical proteins and their annotated locations for NP_690004.4

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC006130
    Consensus CDS
    CCDS12096.1
    UniProtKB/Swiss-Prot
    Q8NEP9
    Related
    ENSP00000334853.3, ENST00000334241.9
    Conserved Domains (5) summary
    smart00349
    Location:448
    KRAB; krueppel associated box
    COG5048
    Location:198595
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:510530
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:443
    KRAB; KRAB box
    pfam13465
    Location:438462
    zf-H2C2_2; Zinc-finger double domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    2841475..2860484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017026375.1XP_016881864.1  zinc finger protein 555 isoform X2

  2. XM_011527716.2XP_011526018.1  zinc finger protein 555 isoform X1

    Conserved Domains (5) summary
    smart00349
    Location:650
    KRAB; krueppel associated box
    COG5048
    Location:200597
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:512532
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:645
    KRAB; KRAB box
    pfam13465
    Location:440464
    zf-H2C2_2; Zinc-finger double domain
Support Center