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SMIM17 small integral membrane protein 17 [ Homo sapiens (human) ]

Gene ID: 147670, updated on 9-Dec-2024

Summary

Official Symbol
SMIM17provided by HGNC
Official Full Name
small integral membrane protein 17provided by HGNC
Primary source
HGNC:HGNC:27114
See related
Ensembl:ENSG00000268182 AllianceGenome:HGNC:27114
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in brain (RPKM 1.6), fat (RPKM 0.2) and 11 other tissues See more
Orthologs
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Genomic context

See SMIM17 in Genome Data Viewer
Location:
19q13.43
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (56643159..56657247)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (59737336..59751380)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (57154527..57168615)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11070 Neighboring gene ZNF71-SMIM17 readthrough (NMD candidate) Neighboring gene sialic acid binding Ig like lectin 31, pseudogene Neighboring gene zinc finger protein 71 Neighboring gene ReSE screen-validated silencer GRCh37_chr19:57128366-57128584 Neighboring gene Sharpr-MPRA regulatory region 15209 Neighboring gene uncharacterized LOC105372473 Neighboring gene zinc finger protein 835 Neighboring gene uncharacterized LOC105372472

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General protein information

Preferred Names
small integral membrane protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001193628.2NP_001180557.1  small integral membrane protein 17

    See identical proteins and their annotated locations for NP_001180557.1

    Status: VALIDATED

    Source sequence(s)
    AC007228
    Consensus CDS
    CCDS58683.1
    UniProtKB/Swiss-Prot
    P0DL12
    Related
    ENSP00000471126.1, ENST00000598409.6

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    56643159..56657247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    59737336..59751380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)