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Smim17 small integral membrane protein 17 [ Mus musculus (house mouse) ]

Gene ID: 100042450, updated on 8-Mar-2024

Summary

Official Symbol
Smim17provided by MGI
Official Full Name
small integral membrane protein 17provided by MGI
Primary source
MGI:MGI:4365374
See related
Ensembl:ENSMUSG00000093536 AllianceGenome:MGI:4365374
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gm16532
Summary
Orthologous to human SMIM17 (small integral membrane protein 17). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in cerebellum adult (RPKM 3.2), CNS E18 (RPKM 2.1) and 5 other tissues See more
Orthologs
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Genomic context

See Smim17 in Genome Data Viewer
Location:
7 A1; 7 3.71 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (6418193..6434085)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (6415194..6431086)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E442 Neighboring gene STARR-seq mESC enhancer starr_17978 Neighboring gene zinc finger protein 78 Neighboring gene STARR-positive B cell enhancer ABC_E8150 Neighboring gene predicted gene, 53349 Neighboring gene zinc finger protein 28 Neighboring gene STARR-seq mESC enhancer starr_17979 Neighboring gene olfactory receptor 1345, pseudogene 1 Neighboring gene olfactory receptor family 2 subfamily BD member 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Potential readthrough

Included gene: Or2bd2

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
small integral membrane protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001134752.2NP_001128224.1  small integral membrane protein 17

    See identical proteins and their annotated locations for NP_001128224.1

    Status: VALIDATED

    Source sequence(s)
    AC188607
    Consensus CDS
    CCDS51990.1
    UniProtKB/TrEMBL
    A0A504
    Related
    ENSMUSP00000126877.2, ENSMUST00000160218.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    6418193..6434085
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)