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FOXP4 forkhead box P4 [ Homo sapiens (human) ]

Gene ID: 116113, updated on 12-Jul-2020

Summary

Official Symbol
FOXP4provided by HGNC
Official Full Name
forkhead box P4provided by HGNC
Primary source
HGNC:HGNC:20842
See related
Ensembl:ENSG00000137166 MIM:608924
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
hFKHLA
Summary
This gene belongs to subfamily P of the forkhead box (FOX) transcription factor family. Forkhead box transcription factors play important roles in the regulation of tissue- and cell type-specific gene transcription during both development and adulthood. Many members of the forkhead box gene family, including members of subfamily P, have roles in mammalian oncogenesis. This gene may play a role in the development of tumors of the kidney and larynx. Alternative splicing of this gene produces multiple transcript variants, some encoding different isoforms. [provided by RefSeq, Jul 2008]
Expression
Ubiquitous expression in stomach (RPKM 7.0), testis (RPKM 4.6) and 25 other tissues See more
Orthologs

Genomic context

See FOXP4 in Genome Data Viewer
Location:
6p21.1
Exon count:
21
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (41546381..41602384)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (41514164..41570122)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112267957 Neighboring gene long intergenic non-protein coding RNA 1276 Neighboring gene FOXP4 antisense RNA 1 Neighboring gene Sharpr-MPRA regulatory region 11601 Neighboring gene VISTA enhancer hs281 Neighboring gene VISTA enhancer hs1100 Neighboring gene Sharpr-MPRA regulatory region 5412 Neighboring gene microRNA 4641 Neighboring gene MyoD family inhibitor

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association study identifies five new susceptibility loci for prostate cancer in the Japanese population.
NHGRI GWA Catalog

HIV-1 interactions

Protein interactions

Protein Gene Interaction Pubs
Tat tat HIV-1 Tat specifically associates with FOXP4 promoter to upregulate FOXP4 expression in T cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ40908, FLJ44184

Gene Ontology Provided by GOA

Function Evidence Code Pubs
DNA-binding transcription factor activity, RNA polymerase II-specific ISA
Inferred from Sequence Alignment
more info
 
DNA-binding transcription factor activity, RNA polymerase II-specific ISM
Inferred from Sequence Model
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nuclear chromatin ISA
Inferred from Sequence Alignment
more info
 

General protein information

Preferred Names
forkhead box protein P4
Names
fork head-related protein like A
winged-helix repressor FOXP4

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012426.1NP_001012426.1  forkhead box protein P4 isoform 1

    See identical proteins and their annotated locations for NP_001012426.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AB080747, AL139331, AW450805, BC040962
    Consensus CDS
    CCDS34447.1
    UniProtKB/Swiss-Prot
    Q8IVH2
    Related
    ENSP00000362151.1, ENST00000373060.5
    Conserved Domains (2) summary
    pfam00250
    Location:467546
    Forkhead; Forkhead domain
    pfam16159
    Location:303370
    FOXP-CC; FOXP coiled-coil domain
  2. NM_001012427.2NP_001012427.1  forkhead box protein P4 isoform 3

    See identical proteins and their annotated locations for NP_001012427.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (3) uses an alternate in-frame splice site in the coding region, compared to variant 1, resulting in a shorter protein (isoform 3).
    Source sequence(s)
    AL139331, AW450805, BC040962, BC052803
    Consensus CDS
    CCDS34448.1
    UniProtKB/Swiss-Prot
    Q8IVH2
    Related
    ENSP00000362148.3, ENST00000373057.7
    Conserved Domains (2) summary
    smart00339
    Location:465537
    FH; FORKHEAD
    pfam16159
    Location:301368
    FOXP-CC; FOXP coiled-coil domain
  3. NM_138457.3NP_612466.1  forkhead box protein P4 isoform 2

    See identical proteins and their annotated locations for NP_612466.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (2) uses several alternate in-frame splice sites in the coding region, compared to variant 1, resulting in a shorter protein (isoform 2).
    Source sequence(s)
    AL139331, AW450805, BC040962
    Consensus CDS
    CCDS4856.1
    UniProtKB/Swiss-Prot
    Q8IVH2
    Related
    ENSP00000362154.3, ENST00000373063.7
    Conserved Domains (2) summary
    pfam00250
    Location:454533
    Forkhead; Forkhead domain
    pfam16159
    Location:302369
    FOXP-CC; FOXP coiled-coil domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    41546381..41602384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011514292.3XP_011512594.1  forkhead box protein P4 isoform X6

    Conserved Domains (2) summary
    pfam00250
    Location:442521
    Forkhead; Forkhead domain
    pfam16159
    Location:278345
    FOXP-CC; FOXP coiled-coil domain
  2. XM_011514290.2XP_011512592.1  forkhead box protein P4 isoform X2

    Conserved Domains (2) summary
    pfam00250
    Location:472551
    Forkhead; Forkhead domain
    pfam16159
    Location:308375
    FOXP-CC; FOXP coiled-coil domain
  3. XM_017010234.2XP_016865723.1  forkhead box protein P4 isoform X7

  4. XM_011514289.2XP_011512591.1  forkhead box protein P4 isoform X1

    Conserved Domains (2) summary
    pfam00250
    Location:474553
    Forkhead; Forkhead domain
    pfam16159
    Location:310377
    FOXP-CC; FOXP coiled-coil domain
  5. XM_011514291.3XP_011512593.1  forkhead box protein P4 isoform X4

    Conserved Domains (2) summary
    pfam00250
    Location:462541
    Forkhead; Forkhead domain
    pfam16159
    Location:310377
    FOXP-CC; FOXP coiled-coil domain
  6. XM_024446319.1XP_024302087.1  forkhead box protein P4 isoform X5

    Related
    ENSP00000386958.1, ENST00000409208.5
    Conserved Domains (2) summary
    smart00339
    Location:455527
    FH; FORKHEAD
    pfam16159
    Location:303370
    FOXP-CC; FOXP coiled-coil domain
  7. XM_006714991.3XP_006715054.1  forkhead box protein P4 isoform X3

    Conserved Domains (2) summary
    pfam00250
    Location:466545
    Forkhead; Forkhead domain
    pfam16159
    Location:302369
    FOXP-CC; FOXP coiled-coil domain
  8. XM_017010233.1XP_016865722.1  forkhead box protein P4 isoform X1

    Conserved Domains (2) summary
    pfam00250
    Location:474553
    Forkhead; Forkhead domain
    pfam16159
    Location:310377
    FOXP-CC; FOXP coiled-coil domain
  9. XM_011514293.3XP_011512595.1  forkhead box protein P4 isoform X8

    Conserved Domains (2) summary
    pfam00250
    Location:368447
    Forkhead; Forkhead domain
    pfam16159
    Location:204271
    FOXP-CC; FOXP coiled-coil domain

RNA

  1. XR_926052.3 RNA Sequence

  2. XR_926053.2 RNA Sequence

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