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BMAL1 basic helix-loop-helix ARNT like 1 [ Empidonax traillii (willow flycatcher) ]

Gene ID: 114056531, updated on 15-Mar-2024

Summary

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Gene symbol
BMAL1
Gene description
basic helix-loop-helix ARNT like 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Empidonax traillii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Passeriformes; Tyrannidae; Empidonax
Also known as
ARNTL
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
100 current ASM303162v1 (GCF_003031625.1) Unplaced Scaffold NW_020955288.1 (776201..828956)

NW_020955288.1Genomic Context describing neighboring genes Neighboring gene Ras association domain family member 10 Neighboring gene uncharacterized LOC114056539 Neighboring gene BTB domain containing 10 Neighboring gene uncharacterized LOC114056523 Neighboring gene parathyroid hormone

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_020955288 Unplaced Scaffold Reference ASM303162v1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian rhythm IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of aryl hydrocarbon receptor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
aryl hydrocarbon receptor nuclear translocator-like protein 1
Names
aryl hydrocarbon receptor nuclear translocator like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Empidonax traillii Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM303162v1

Genomic

  1. NW_020955288.1 Reference ASM303162v1

    Range
    776201..828956
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027881800.1 → XP_027737601.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    Conserved Domains (3) summary
    smart00091
    Location:156 → 215
    PAS; PAS domain
    cd11438
    Location:74 → 137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:346 → 449
    PAS_11; PAS domain

  2. XM_027881799.1 → XP_027737600.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    Conserved Domains (3) summary
    smart00091
    Location:156 → 215
    PAS; PAS domain
    cd11438
    Location:74 → 137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:346 → 449
    PAS_11; PAS domain

  3. XM_027881801.1 → XP_027737602.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X2

    Conserved Domains (3) summary
    smart00091
    Location:156 → 215
    PAS; PAS domain
    cd11438
    Location:74 → 137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:345 → 448
    PAS_11; PAS domain

  4. XM_027881802.1 → XP_027737603.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

    Conserved Domains (3) summary
    smart00091
    Location:149 → 208
    PAS; PAS domain
    cd11438
    Location:67 → 130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:339 → 442
    PAS_11; PAS domain

  5. XM_027881803.1 → XP_027737604.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X4

    Conserved Domains (3) summary
    smart00091
    Location:149 → 208
    PAS; PAS domain
    cd11438
    Location:67 → 130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:338 → 441
    PAS_11; PAS domain

  6. XM_027881805.1 → XP_027737606.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X6

    Conserved Domains (3) summary
    smart00091
    Location:136 → 195
    PAS; PAS domain
    cd11438
    Location:54 → 117
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:325 → 428
    PAS_11; PAS domain

  7. XM_027881804.1 → XP_027737605.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

    Conserved Domains (3) summary
    smart00091
    Location:136 → 195
    PAS; PAS domain
    cd11438
    Location:54 → 117
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:326 → 429
    PAS_11; PAS domain
Nucleotide Protein
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