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Bmal1 basic helix-loop-helix ARNT like 1 [ Mus musculus (house mouse) ]

Gene ID: 11865, updated on 14-Mar-2023

Summary

Official Symbol
Bmal1provided by MGI
Official Full Name
basic helix-loop-helix ARNT like 1provided by MGI
Primary source
MGI:MGI:1096381
See related
Ensembl:ENSMUSG00000055116 AllianceGenome:MGI:1096381
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MOP3; Arnt3; Arntl; BMAL1b; bHLHe5; bmal1b'
Summary
The protein encoded by this gene is a basic helix-loop-helix protein that forms a heterodimer with Clock. This heterodimer binds E-box enhancer elements upstream of Period (Per1, Per2, Per3) and Cryptochrome (Cry1, Cry2) genes and activates transcription of these genes. Per and Cry proteins heterodimerize and repress their own transcription by interacting in a feedback loop with Clock/Arntl complexes. Defects in this gene have been linked to infertility, problems with gluconeogenesis and lipogenesis, and altered sleep patterns. Two transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Jan 2014]
Expression
Ubiquitous expression in thymus adult (RPKM 4.9), large intestine adult (RPKM 4.6) and 28 other tissues See more
Orthologs
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Genomic context

See Bmal1 in Genome Data Viewer
Location:
7 F1; 7 59.17 cM
Exon count:
24
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (112777820..112913333)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (113178471..113314126)

Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 40452 Neighboring gene RIKEN cDNA 4930543E12 gene Neighboring gene predicted gene, 33721 Neighboring gene BTB (POZ) domain containing 10 Neighboring gene parathyroid hormone

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (1) 
  • Targeted (8)  1 citation
  • Endonuclease-mediated (4) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IC
Inferred by Curator
more info
PubMed 
enables DNA-binding transcription activator activity, RNA polymerase II-specific IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA-binding transcription factor activity ISA
Inferred from Sequence Alignment
more info
PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IDA
Inferred from Direct Assay
more info
PubMed 
enables DNA-binding transcription factor binding ISO
Inferred from Sequence Orthology
more info
 
enables E-box binding IDA
Inferred from Direct Assay
more info
PubMed 
enables E-box binding ISO
Inferred from Sequence Orthology
more info
 
enables Hsp90 protein binding ISO
Inferred from Sequence Orthology
more info
 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables aryl hydrocarbon receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables bHLH transcription factor binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
enables protein heterodimerization activity IPI
Inferred from Physical Interaction
more info
PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
enables sequence-specific double-stranded DNA binding ISO
Inferred from Sequence Orthology
more info
 
enables transcription cis-regulatory region binding IDA
Inferred from Direct Assay
more info
PubMed 
enables transcription factor binding ISA
Inferred from Sequence Alignment
more info
PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IDA
Inferred from Direct Assay
more info
PubMed 
involved_in circadian regulation of gene expression IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in circadian regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in circadian rhythm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
acts_upstream_of_or_within circadian rhythm IDA
Inferred from Direct Assay
more info
PubMed 
involved_in circadian rhythm IDA
Inferred from Direct Assay
more info
PubMed 
involved_in circadian rhythm IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in maternal process involved in parturition IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
PubMed 
involved_in negative regulation of TOR signaling IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of cold-induced thermogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of fat cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of glucocorticoid receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in oxidative stress-induced premature senescence IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of DNA-templated transcription IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of DNA-templated transcription ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of canonical Wnt signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of circadian rhythm ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of protein acetylation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of protein acetylation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of skeletal muscle cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
involved_in positive regulation of transcription by RNA polymerase II IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II IGI
Inferred from Genetic Interaction
more info
PubMed 
acts_upstream_of_or_within positive regulation of transcription by RNA polymerase II ISO
Inferred from Sequence Orthology
more info
 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within protein import into nucleus IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of cellular senescence IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of hair cycle ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of insulin secretion IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of neurogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within regulation of protein catabolic process IDA
Inferred from Direct Assay
more info
PubMed 
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in regulation of type B pancreatic cell development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in response to redox state IDA
Inferred from Direct Assay
more info
PubMed 
involved_in response to redox state ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within rhythmic process IEA
Inferred from Electronic Annotation
more info
 
involved_in spermatogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
part_of CLOCK-BMAL transcription complex IPI
Inferred from Physical Interaction
more info
PubMed 
part_of CLOCK-BMAL transcription complex ISO
Inferred from Sequence Orthology
more info
 
part_of aryl hydrocarbon receptor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in chromatoid body IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in nuclear body IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
part_of transcription regulator complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of transcription regulator complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
basic helix-loop-helix ARNT-like protein 1; aryl hydrocarbon receptor nuclear translocator-like protein 1
Names
brain and muscle ARNT-like 1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243048.2NP_001229977.1  basic helix-loop-helix ARNT-like protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001229977.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks several in-frame exons in the coding region, compared to variant 1. This results in a shorter protein (isoform 2), compared to isoform 1.
    Source sequence(s)
    AC156605
    Consensus CDS
    CCDS85390.1
    UniProtKB/Swiss-Prot
    Q9WTL8
    UniProtKB/TrEMBL
    Q3UHZ2
    Related
    ENSMUSP00000147764.2, ENSMUST00000210074.2
    Conserved Domains (3) summary
    smart00091
    Location:136195
    PAS; PAS domain
    pfam00010
    Location:61113
    HLH; Helix-loop-helix DNA-binding domain
    cl25986
    Location:326428
    PAS_3; PAS fold
  2. NM_001357070.2NP_001343999.1  basic helix-loop-helix ARNT-like protein 1 isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate, in-frame splice site in the 3' coding region, compared to variant 1, and encodes a shorter isoform (3), compared to isoform 1.
    Source sequence(s)
    AC156605
    UniProtKB/TrEMBL
    A0A6P5Q0F8
    Conserved Domains (3) summary
    smart00091
    Location:149208
    PAS; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:338440
    PAS_11; PAS domain
  3. NM_001368412.1NP_001355341.1  basic helix-loop-helix ARNT-like protein 1 isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC156605
    UniProtKB/Swiss-Prot
    Q9WTL9
    UniProtKB/TrEMBL
    A0A6P7REZ3
    Conserved Domains (3) summary
    pfam00989
    Location:153260
    PAS; PAS fold
    pfam14598
    Location:345447
    PAS_11; PAS domain
    cd11438
    Location:74137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  4. NM_001374642.1NP_001361571.1  basic helix-loop-helix ARNT-like protein 1 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC156605
    Consensus CDS
    CCDS90314.1
    UniProtKB/TrEMBL
    A0A1B0GS77, A0A6P7R7U9
    Related
    ENSMUSP00000147823.2, ENSMUST00000211770.2
    Conserved Domains (3) summary
    pfam00989
    Location:153260
    PAS; PAS fold
    pfam14598
    Location:346448
    PAS_11; PAS domain
    cd11438
    Location:74137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  5. NM_001411976.1NP_001398905.1  basic helix-loop-helix ARNT-like protein 1 isoform 6

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) encodes the longest isoform (6).
    Source sequence(s)
    AC156605
  6. NM_001411977.1NP_001398906.1  basic helix-loop-helix ARNT-like protein 1 isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC156605
    UniProtKB/TrEMBL
    A0A1B0GS77, A0A6P7R7U9
  7. NM_001411978.1NP_001398907.1  basic helix-loop-helix ARNT-like protein 1 isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC156605
  8. NM_001411979.1NP_001398908.1  basic helix-loop-helix ARNT-like protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC156605
    UniProtKB/TrEMBL
    A0A6P5PXN8, Q3UHZ2
  9. NM_001411980.1NP_001398909.1  basic helix-loop-helix ARNT-like protein 1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC156605
    UniProtKB/TrEMBL
    A0A6P5PXN8, Q3UHZ2
  10. NM_001411981.1NP_001398910.1  basic helix-loop-helix ARNT-like protein 1 isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC156605
    UniProtKB/TrEMBL
    A0A6P5Q0F8
  11. NM_007489.5NP_031515.1  basic helix-loop-helix ARNT-like protein 1 isoform 1

    See identical proteins and their annotated locations for NP_031515.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes isoform 1.
    Source sequence(s)
    AC156605
    Consensus CDS
    CCDS40092.1
    UniProtKB/Swiss-Prot
    Q9WTL8
    UniProtKB/TrEMBL
    A0A6P5PXN8, Q3UHZ2
    Related
    ENSMUSP00000046235.8, ENSMUST00000047321.9
    Conserved Domains (3) summary
    pfam00989
    Location:146253
    PAS; PAS fold
    pfam14598
    Location:339441
    PAS_11; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

RNA

  1. NR_177990.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC156605
  2. NR_177991.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC156605

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000073.7 Reference GRCm39 C57BL/6J

    Range
    112777820..112913333
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006507246.5XP_006507309.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006507309.1

    Conserved Domains (3) summary
    pfam00989
    Location:153260
    PAS; PAS fold
    pfam14598
    Location:346448
    PAS_11; PAS domain
    cd11438
    Location:74137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  2. XM_006507245.4XP_006507308.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006507308.1

    Conserved Domains (3) summary
    pfam00989
    Location:153260
    PAS; PAS fold
    pfam14598
    Location:346448
    PAS_11; PAS domain
    cd11438
    Location:74137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  3. XM_006507249.4XP_006507312.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X2

    Conserved Domains (3) summary
    pfam00989
    Location:153260
    PAS; PAS fold
    pfam14598
    Location:345447
    PAS_11; PAS domain
    cd11438
    Location:74137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  4. XM_036152605.1XP_036008498.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X7

    Conserved Domains (1) summary
    pfam14598
    Location:89191
    PAS_11; PAS domain
  5. XM_036152606.1XP_036008499.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X8

    Conserved Domains (1) summary
    pfam14598
    Location:88190
    PAS_11; PAS domain
  6. XM_006507252.4XP_006507315.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

    Conserved Domains (3) summary
    smart00091
    Location:149208
    PAS; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:339441
    PAS_11; PAS domain
  7. XM_006507253.4XP_006507316.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X4

    Conserved Domains (3) summary
    pfam00989
    Location:146253
    PAS; PAS fold
    pfam14598
    Location:338440
    PAS_11; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  8. XM_011241656.4XP_011239958.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_011239958.1

    Conserved Domains (3) summary
    pfam00989
    Location:153260
    PAS; PAS fold
    pfam14598
    Location:346448
    PAS_11; PAS domain
    cd11438
    Location:74137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  9. XM_030242018.2XP_030097878.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

    Conserved Domains (3) summary
    smart00091
    Location:149208
    PAS; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:339441
    PAS_11; PAS domain
  10. XM_006507248.4XP_006507311.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    Conserved Domains (3) summary
    pfam00989
    Location:153260
    PAS; PAS fold
    pfam14598
    Location:346448
    PAS_11; PAS domain
    cd11438
    Location:74137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  11. XM_030242020.1XP_030097880.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X6

    Conserved Domains (3) summary
    smart00091
    Location:149208
    PAS; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:338440
    PAS_11; PAS domain
  12. XM_030242019.1XP_030097879.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X5

    Conserved Domains (3) summary
    pfam00989
    Location:146253
    PAS; PAS fold
    pfam14598
    Location:339441
    PAS_11; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  13. XM_036152604.1XP_036008497.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X3

    Conserved Domains (3) summary
    smart00091
    Location:149208
    PAS; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:339441
    PAS_11; PAS domain
  14. XM_006507247.5XP_006507310.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X1

    See identical proteins and their annotated locations for XP_006507310.1

    Conserved Domains (3) summary
    pfam00989
    Location:153260
    PAS; PAS fold
    pfam14598
    Location:346448
    PAS_11; PAS domain
    cd11438
    Location:74137
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
  15. XM_017321950.2XP_017177439.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X6

    UniProtKB/Swiss-Prot
    Q9WTL8
    UniProtKB/TrEMBL
    A0A6P5Q0F8
    Conserved Domains (3) summary
    smart00091
    Location:149208
    PAS; PAS domain
    cd11438
    Location:67130
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins
    pfam14598
    Location:338440
    PAS_11; PAS domain
  16. XM_030242022.2XP_030097882.1  aryl hydrocarbon receptor nuclear translocator-like protein 1 isoform X9

    Conserved Domains (3) summary
    pfam00989
    Location:129236
    PAS; PAS fold
    pfam14598
    Location:322424
    PAS_11; PAS domain
    cd11438
    Location:50113
    bHLH-PAS_ARNTL_PASD3; basic helix-loop-helix-Per-ARNT-Sim (bHLH-PAS) domain found in aryl hydrocarbon receptor nuclear translocator-like protein 1 (ARNTL) and similar proteins

RNA

  1. XR_004933997.1 RNA Sequence

  2. XR_003946377.2 RNA Sequence

  3. XR_001785467.3 RNA Sequence