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LOC110987571 PR domain zinc finger protein 16-like [ Acanthaster planci (crown-of-thorns starfish) ]

Gene ID: 110987571, updated on 9-Nov-2023

Summary

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Gene symbol
LOC110987571
Gene description
PR domain zinc finger protein 16-like
See related
EnsemblRapid:LOC110987571
Gene type
protein coding
RefSeq status
MODEL
Organism
Acanthaster planci
Lineage
Eukaryota; Metazoa; Echinodermata; Eleutherozoa; Asterozoa; Asteroidea; Valvatacea; Valvatida; Acanthasteridae; Acanthaster
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Genomic context

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See LOC110987571 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current OKI-Apl_1.0 (GCF_001949145.1) Unplaced Scaffold NW_019091551.1 (222975..368239)

NW_019091551.1Genomic Context describing neighboring genes Neighboring gene cationic amino acid transporter 2-like Neighboring gene cationic amino acid transporter 2-like Neighboring gene uncharacterized LOC110987572 Neighboring gene protein kinase C iota type-like Neighboring gene uncharacterized LOC110987568 Neighboring gene melatonin receptor type 1B-A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_019091551 Unplaced Scaffold Reference OKI-Apl_1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
PR domain zinc finger protein 16-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Acanthaster planci Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference OKI-Apl_1.0 Primary Assembly

Genomic

  1. NW_019091551.1 Reference OKI-Apl_1.0 Primary Assembly

    Range
    222975..368239
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022250401.1 → XP_022106093.1  PR domain zinc finger protein 16-like isoform X1

    UniProtKB/TrEMBL
    A0A8B7ZKE0
    Related
    XP_022106093.1, XM_022250401.1
    Conserved Domains (8) summary
    smart00317
    Location:95 → 204
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:301 → 582
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:908 → 928
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:425 → 443
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:906 → 928
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:920 → 944
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:369 → 445
    zf-C2H2_8; C2H2-type zinc ribbon
    cl26761
    Location:1017 → 1192
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  2. XM_022250402.1 → XP_022106094.1  PR domain zinc finger protein 16-like isoform X2

    UniProtKB/TrEMBL
    A0A8B7ZKT2
    Related
    XP_022106094.1, XM_022250402.1
    Conserved Domains (8) summary
    smart00317
    Location:95 → 204
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:300 → 581
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:907 → 927
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:424 → 442
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:905 → 927
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:919 → 943
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:368 → 444
    zf-C2H2_8; C2H2-type zinc ribbon
    cl26761
    Location:1016 → 1191
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]

  3. XM_022250403.1 → XP_022106095.1  PR domain zinc finger protein 16-like isoform X3

    UniProtKB/TrEMBL
    A0A8B7ZMH6
    Related
    XP_022106095.1, XM_022250403.1
    Conserved Domains (8) summary
    smart00317
    Location:77 → 186
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
    COG5048
    Location:283 → 564
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:890 → 910
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:407 → 425
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:888 → 910
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:902 → 926
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:351 → 427
    zf-C2H2_8; C2H2-type zinc ribbon
    cl26761
    Location:999 → 1174
    MDN1; Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis]
Nucleotide Protein
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