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Sart3 spliceosome associated factor 3, U4/U6 recycling protein [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101844583, updated on 8-Mar-2024

Summary

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Gene symbol
Sart3
Gene description
spliceosome associated factor 3, U4/U6 recycling protein
See related
EnsemblRapid:ENSMAUG00000012434
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429206.1 (5141350..5168909, complement)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801691.1 (2278969..2304945, complement)

NW_024429206.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L5-like Neighboring gene FIC domain protein adenylyltransferase Neighboring gene iron-sulfur cluster assembly enzyme Neighboring gene transmembrane protein 119

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ASAP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squamous cell carcinoma antigen recognized by T-cells 3
Names
squamous cell carcinoma antigen recognized by T cells 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429206.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    5141350..5168909 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021232365.2 → XP_021088024.2  squamous cell carcinoma antigen recognized by T-cells 3 isoform X1

    UniProtKB/TrEMBL
    A0A3Q0D5Y7
    Related
    ENSMAUP00000012018.2, ENSMAUT00000015920.2
    Conserved Domains (3) summary
    smart00360
    Location:813 → 884
    RRM; RNA recognition motif
    COG5107
    Location:99 → 477
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    TIGR01622
    Location:709 → 933
    SF-CC1; splicing factor, CC1-like family

  2. XM_040731602.1 → XP_040587536.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X3

    UniProtKB/TrEMBL
    A0A3Q0D5Y7
    Related
    ENSMAUP00000012027.2, ENSMAUT00000015931.2
    Conserved Domains (3) summary
    smart00360
    Location:747 → 818
    RRM; RNA recognition motif
    COG5107
    Location:37 → 411
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    TIGR01622
    Location:643 → 867
    SF-CC1; splicing factor, CC1-like family

  3. XM_005078927.4 → XP_005078984.2  squamous cell carcinoma antigen recognized by T-cells 3 isoform X2

    UniProtKB/TrEMBL
    A0A1U7R421
    Conserved Domains (3) summary
    smart00360
    Location:795 → 866
    RRM; RNA recognition motif
    COG5107
    Location:99 → 459
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
    TIGR01622
    Location:691 → 915
    SF-CC1; splicing factor, CC1-like family

  4. XM_040731603.1 → XP_040587537.1  squamous cell carcinoma antigen recognized by T-cells 3 isoform X4

    Conserved Domains (2) summary
    smart00360
    Location:448 → 519
    RRM; RNA recognition motif
    TIGR01622
    Location:344 → 568
    SF-CC1; splicing factor, CC1-like family
Nucleotide Protein
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