2JRS,2DGO,2KXN,2KM8,2D9P,2KI2,1HD0,1UAW,1X4D,2DNL,3NS5,1SJQ,1SJR,2KRB,1X4F,1S79,1WHX,2JVR,2CPY,2EK6,2KH9,2CQH,1WG5,2DGW,2BZ2,2GO9,2XNR,1QM9,2DNQ,2J76,2CPH,2YTC,2CPE,2DNG,1OIA,2JVO,2KXF,1WHW,2J0Q,2I2Y,2DO0,3MD3,1FXL,2CQ0,2CPJ,2CQB,2CJK,3MD1


Conserved Protein Domain Family
RRM

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smart00360: RRM 
Click on image for an interactive view with Cn3D
RNA recognition motif
Statistics
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PSSM-Id: 214636
View PSSM: smart00360
Aligned: 524 rows
Threshold Bit Score: 29.484
Threshold Setting Gi: 476073
Created: 13-Jul-2011
Updated: 16-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2JRS_A        28 RLYVGSLHFNITEDMLRGIFe---------------PFGRIeSIQLMMDSetGRSKGYGFITFSDSECAKKALEQLNGFE 92
gi 25012367  127 AILVTNLTSDATEADLRKVFn---------------DSGEIeSIIMLGQK--------AVVKFKDDEGFCKSFLANG-SI 182
gi 19112391    3 RIIIKNIPRYYDKEKLSTYLksl-----------pqLDAEItDVSVAKTKe-GVSRRFAFIGFKNEEDADKAIRYLNKSY 70
gi 207340299   3 RIIVKGLPVYLTDDNLREHFtkrlrqkhshqavngsGPDLItDVKILRDRn-GESRRFGFIGYRNEEDAFDAVEYFNGSF 81
gi 323305120  34 SIFIKNLPTITTRDDILNFFs---------------EVGPIkSIYLSNATkvk--ylWAFVTYKNSSDSEKAIKRYNNFY 96
gi 297693060  40 RLIVKNLPNGMKEERFRQLFa---------------AFGTLtDCSLKFTKd-GKFRKFGFIGFKSEEEAQKALKHFNKSF 103
gi 3789907    87 AIFVGDLTPIAQEQTLNNIFk---------------EFGEItSIRLFP------SRGFAFVNYKDSESCVRAIAGMNGGL 145
gi 186512055   3 RICVKNLPKHVKEDQLRDHFs---------------QKGEItDAKLMRSNd-GKSRQFGFIGFRSAQEAQQAIKYFNNTY 66
gi 17542530    4 RLIVKNLPSTCTEQQLRKFFe---------------KYGQIsDASLKYTKe-GKFRGFAFVGFLDEGSASNALAKSNQTF 67
gi 735966      3 RIIIKNLPERADEKILKQQFe---------------KFGGItDCKVMRTPq-GVSRKFGFIGFENEDQAQTAITKMNGAY 66

                 ....*...
2JRS_A        93 LAGRPMKV 100
gi 25012367  183 VNNAPIFI 190
gi 19112391   71 VETSRIEV 78
gi 207340299  82 INTSKIEV 89
gi 323305120  97 FRGKKLLV 104
gi 297693060 104 IDTSRITV 111
gi 3789907   146 VDGNPVKV 153
gi 186512055  67 LGTSLIIV 74
gi 17542530   68 FNSKKLTV 75
gi 735966     67 IQSSKLQV 74
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