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Tra2a transformer 2 alpha homolog [ Mesocricetus auratus (golden hamster) ]

Gene ID: 101842485, updated on 8-Mar-2024

Summary

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Gene symbol
Tra2a
Gene description
transformer 2 alpha homolog
See related
EnsemblRapid:ENSMAUG00000023019
Gene type
protein coding
RefSeq status
MODEL
Organism
Mesocricetus auratus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429266.1 (111948262..111968975)
102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801856.1 (769641..802538, complement)

NW_024429266.1Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 221 member A Neighboring gene coiled-coil domain containing 126 Neighboring gene uncharacterized LOC110339493 Neighboring gene insulin like growth factor 2 mRNA binding protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transformer-2 protein homolog alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference BCM_Maur_2.0 Primary Assembly

Genomic

  1. NW_024429266.1 Reference BCM_Maur_2.0 Primary Assembly

    Range
    111948262..111968975
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040737437.1 → XP_040593371.1  transformer-2 protein homolog alpha isoform X2

    Conserved Domains (1) summary
    smart00360
    Location:148 → 217
    RRM; RNA recognition motif

  2. XM_040737438.1 → XP_040593372.1  transformer-2 protein homolog alpha isoform X3

    Conserved Domains (1) summary
    smart00360
    Location:148 → 217
    RRM; RNA recognition motif

  3. XM_040737439.1 → XP_040593373.1  transformer-2 protein homolog alpha isoform X4

    Conserved Domains (1) summary
    smart00360
    Location:148 → 217
    RRM; RNA recognition motif

  4. XM_040737436.1 → XP_040593370.1  transformer-2 protein homolog alpha isoform X1

    Related
    ENSMAUP00000026248.1, ENSMAUT00000067789.1
    Conserved Domains (1) summary
    smart00360
    Location:148 → 217
    RRM; RNA recognition motif

  5. XM_040737441.1 → XP_040593375.1  transformer-2 protein homolog alpha isoform X6

    UniProtKB/TrEMBL
    A0A1U8C4D7
    Conserved Domains (1) summary
    cd12363
    Location:17 → 96
    RRM_TRA2; RNA recognition motif (RRM) found in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

  6. XM_040737440.1 → XP_040593374.1  transformer-2 protein homolog alpha isoform X5

    Related
    ENSMAUP00000026704.1, ENSMAUT00000073044.1
    Conserved Domains (1) summary
    cd12363
    Location:116 → 195
    RRM_TRA2; RNA recognition motif (RRM) found in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins

  7. XM_040737442.1 → XP_040593376.1  transformer-2 protein homolog alpha isoform X6

    UniProtKB/TrEMBL
    A0A1U8C4D7
    Conserved Domains (1) summary
    cd12363
    Location:17 → 96
    RRM_TRA2; RNA recognition motif (RRM) found in transformer-2 protein homolog TRA2-alpha, TRA2-beta and similar proteins
Nucleotide Protein Strain
Heading Accession and Version

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