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dhx16 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [ Maylandia zebra (zebra mbuna) ]

Gene ID: 101471848, updated on 8-Mar-2024

Summary

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Gene symbol
dhx16
Gene description
DEAH (Asp-Glu-Ala-His) box polypeptide 16
See related
Ensembl:ENSMZEG00005027755
Gene type
protein coding
RefSeq status
MODEL
Organism
Maylandia zebra
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Haplochromini; Maylandia; Maylandia zebra complex
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
104 current M_zebra_UMD2a (GCF_000238955.4) Unplaced Scaffold NW_020192468.1 (58538..84523, complement)
101 previous assembly MetZeb1.1 (GCF_000238955.1) Unplaced Scaffold NW_004531960.1 (567200..593317, complement)

NW_020192468.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101471075 Neighboring gene ring finger protein 183 Neighboring gene lysosomal thioesterase PPT2 Neighboring gene uncharacterized LOC111501469 Neighboring gene uncharacterized LOC105940449

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular anatomical structure IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
Names
DEAH-box helicase 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Maylandia zebra Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference M_zebra_UMD2a Primary Assembly

Genomic

  1. NW_020192468.1 Reference M_zebra_UMD2a Primary Assembly

    Range
    58538..84523 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004573569.3 → XP_004573626.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2

    UniProtKB/TrEMBL
    A0A3P9DSX9
    Related
    ENSMZEP00005037241.1, ENSMZET00005038544.1
    Conserved Domains (5) summary
    smart00487
    Location:406 → 593
    DEXDc; DEAD-like helicases superfamily
    smart00847
    Location:810 → 894
    HA2; Helicase associated domain (HA2) Add an annotation
    cd00046
    Location:428 → 567
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00271
    Location:611 → 741
    Helicase_C; Helicase conserved C-terminal domain
    pfam07717
    Location:929 → 1027
    OB_NTP_bind; Oligonucleotide/oligosaccharide-binding (OB)-fold

  2. XM_004573568.3 → XP_004573625.1  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X1

    Conserved Domains (2) summary
    COG1643
    Location:389 → 1027
    HrpA; HrpA-like RNA helicase [Translation, ribosomal structure and biogenesis]
    pfam17380
    Location:122 → 381
    DUF5401; Family of unknown function (DUF5401)
Nucleotide Protein
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