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MetZeb1.1

Organism name:
Maylandia zebra (zebra mbuna)
Isolate:
#2_Kocher
Sex:
female
BioSample:
SAMN00139642
Submitter:
Broad Institute
Date:
2012/07/11
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000238955.2 (replaced)
RefSeq assembly accession:
GCF_000238955.1 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGTA02
Assembly method:
AllPaths v. R37043
Genome coverage:
129.7x
Sequencing technology:
Illumina HiSeq

IDs: 398768 [UID] 398768 [GenBank] 667818 [RefSeq]

See Genome Information for Maylandia zebra

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples were provided by Dr. Tom Kocher, University of Maryland

Global statistics

Total sequence length849,595,388
Total assembly gap length136,067,525
Gaps between scaffolds0
Number of scaffolds3,725
Scaffold N503,702,874
Scaffold L5062
Number of contigs72,061
Contig N5019,949
Contig L5010,125
Total number of chromosomes and plasmids0

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced849,595,3883,725713,527,8633,702,87468,3360
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