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LOC101159573 zinc finger protein 239 [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101159573, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101159573
Gene description
zinc finger protein 239
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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Location:
chromosome: 4
Exon count:
3
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 4 NC_019862.2 (6435311..6441296)
102 previous assembly ASM31367v1 (GCF_000313675.1) 4 NC_019862.1 (6971922..6977918)

Chromosome 4 - NC_019862.2Genomic Context describing neighboring genes Neighboring gene NACHT and WD repeat domain containing 1 Neighboring gene uncharacterized LOC101163803 Neighboring gene chromodomain helicase DNA binding protein 1-like Neighboring gene TRAF3 interacting protein 2-like Neighboring gene WWC family member 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 239

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019862.2 Reference ASM223467v1 Primary Assembly

    Range
    6435311..6441296
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011473819.3 → XP_011472121.1  zinc finger protein 239

    See identical proteins and their annotated locations for XP_011472121.1

    UniProtKB/TrEMBL
    A0A3B3IJM2
    Conserved Domains (2) summary
    COG5048
    Location:158 → 317
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]

  2. XM_011473818.3 → XP_011472120.1  zinc finger protein 239

    See identical proteins and their annotated locations for XP_011472120.1

    UniProtKB/TrEMBL
    A0A3B3IJM2
    Conserved Domains (2) summary
    COG5048
    Location:158 → 317
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:273 → 293
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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