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LOC101156382 zinc finger protein 2 homolog [ Oryzias latipes (Japanese medaka) ]

Gene ID: 101156382, updated on 9-Nov-2023

Summary

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Gene symbol
LOC101156382
Gene description
zinc finger protein 2 homolog
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryzias latipes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Beloniformes; Adrianichthyidae; Oryziinae; Oryzias
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Genomic context

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See LOC101156382 in Genome Data Viewer
Location:
chromosome: 17
Exon count:
7
Annotation release Status Assembly Chr Location
103 current ASM223467v1 (GCF_002234675.1) 17 NC_019875.2 (11380846..11392850, complement)
102 previous assembly ASM31367v1 (GCF_000313675.1) Unplaced Scaffold NW_004089872.1 (15164..28426, complement)

Chromosome 17 - NC_019875.2Genomic Context describing neighboring genes Neighboring gene zinc finger protein 271 Neighboring gene uncharacterized LOC111949133 Neighboring gene zinc finger protein 2 Neighboring gene oocyte zinc finger protein XlCOF6-like Neighboring gene uncharacterized LOC101163634

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular developmental process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 2 homolog; zinc finger protein 570

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryzias latipes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM223467v1 Primary Assembly

Genomic

  1. NC_019875.2 Reference ASM223467v1 Primary Assembly

    Range
    11380846..11392850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023965648.1 → XP_023821416.1  zinc finger protein 2 homolog isoform X2

    Conserved Domains (6) summary
    COG5048
    Location:512 → 660
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:621 → 705
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:599 → 619
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:431 → 451
    zf-C2H2; Zinc finger, C2H2 type
    pfam05485
    Location:6 → 83
    THAP; THAP domain
    pfam13465
    Location:443 → 468
    zf-H2C2_2; Zinc-finger double domain

  2. XM_023965647.1 → XP_023821415.1  zinc finger protein 570 isoform X1

    Conserved Domains (6) summary
    COG5048
    Location:592 → 740
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:701 → 785
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:679 → 699
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:511 → 531
    zf-C2H2; Zinc finger, C2H2 type
    pfam05485
    Location:6 → 83
    THAP; THAP domain
    pfam13465
    Location:523 → 548
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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